GgaINT0029969 @ galGal3
Intron Retention
Gene
ENSGALG00000004624 | MYO5A_CHICK
Description
NA
Coordinates
chr10:10067094-10071126:+
Coord C1 exon
chr10:10067094-10067292
Coord A exon
chr10:10067293-10071032
Coord C2 exon
chr10:10071033-10071126
Length
3740 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TCTCTCATTTTAATTTACAGGAT
3' ss Score
10.63
Exon sequences
Seq C1 exon
GCTGCTGGAGTCTCAGCTGCAGTCGCAGAAGAAGAGCCACGAGAATGAGCTGGAGTCACTGCGAGGTGAGATCCAAAGTCTGAAGGAAGAAAACAATCGCCAGCAGCAGCTCTTGGCACAGAATCTGCAGCTGCCCCCGGAGGCCCGCATTGAAGCCAGTCTGCAGCATGAGATCACCCGGCTGACAAACGAGAACTTG
Seq A exon
GTAAGGGCAATGATGTTGTTGGAGCAGGCATGGAGTCTTACAAGCTTGTCTGTGCCTGTAAGTTGTCATTGGTTTTCAGATGGCAGCCTCTTGTAAAAAAGCTGCTTGAGTGCAGCCTTTTTTTTGTTTTAGGTAAGCAAATAGAAGAAAGAAACTAATGACTACTGATTAAGTCGAATCATTTTGAGGAATTTGTTAGTTTGTGGCATAGAAAAAGTTCGCGGATCCCAGTGTAAGAGTGCTGGTTTCAACTAATGAGTTTAATCATTCCTAAATAGAATCATCGATATGCATCGATGATAAAAAAAAAAAATAGTATTGGCAGGCAGTGGTGTTTCTTCTGAAATATTATTTTGTTGAAAAATGCTGATGTAGTTCTTTAATGCTTCAGTGTAGCTTTTCTTCCCCTTTCCCTCCCTGCCTGAAGCTACACAGATCATCCACTGTGTTACGAGCTCCAGGTATTCAGTGTTCTGTTCCAGAAGAAGAAACTTGGTTAGAAGTTACTTGGCTGTTTGGTGTTCCTTGTTCCCTGTACCACATTTTTGTACGAAAAAACACCTTTTCCCCTGAAGGTGTATGTTCATTGTGTATGGGCTAGTTCATTTCTGGGGAAATTTTCAGCCTATACTGAAAAATCACTTTATTATCACTGTTTATTAGCTTGGAGGTCCTCCGTATAATTTCTTCTTTGTAGTAGAATGCACCAGACTATGTAGGTTGCTCTGAAAGTAATGCCTCCTATTTATTTCCAGGGAAACTGCAACAAATACAAATAGCACAATAACACTATTTGATAGAGATAGATTTGCAGCTACAAAACACTGTTTTTCAGTTGTCACCATCATTAGCTATGCGTTTTTACCGGCAGTACTGAACAAGAGCCTGTGTGCTCTGCTCATAAAAATCTGCACCACTGGAGGGCACCTACTGTGCCACAGCCGCAATGATAGTGTTGTTGCTGCAGTGCACCACCCAGCACCTCACTGTGCTCACATCCAGTTAGGTCTCCGTAAAAGTTCAGCAGGCGTTGATGAGTGAAGGAATTCAATCCCACCCCTTTGCTTCATATTTATTTCCATGTCAGACACCATTCTGTCTGTAGAGGTTCAACTTCTACTCCACACCACCAACATCAACCTCTGGCATCATGGGCCAGTGTAATAAAATAAGAGGCATTACTTTTGGAGCAGCCGTTGTACTTCAGGGAGAAAATTCAGAGCTCTGAGTGCCATCGCTTTCTCTAAACAAGCCAAAGTGCTGCTTAGAGAGCCTTTTCTGCTTACATATGTTACAGAGGTTTTCATTGTAAAGCTGTTGTCTTAGTACCGAGGTTTAGAGCAATAGCCAGTTCAGCTTAATAGCTCTTAGAAAATTGATTGAAAGTCTGTTACAAATACATACCAGCAGTAGCTGACTCCTACTGGAAAAGGTAAATGGCAAATGCTTCCATCTTGGACAGTTCCTCCTGCTGCTTAGTCATGTGTTCTGAGTTTTAGCCTTTCTTCCACCAACGGAGCTACTCATCACGTTCCGAGTCCGAAGACAACAGAGTCACGTAATTAAATCCCAGAGGAGATTTCTTTCTTTAAAAATGCAGTGAATGTAATTTTACTTGTTAAAAACAGACTCATTTGTTAGTATTTCACTACAAATATTTGAGTACTGCAAATCTGCTCCAAACTGGGAATAGGCTTCTTTTCCAACCCTAGCCCCACAGCGCAAATAATTGACAGCTTTCCCAGATGTGATGTTTGAATGGCAGTACTTACTGCAATCCCATCTCCATTAACACAGGGAAGTGTTCTTTCCAGAGCCTTGCAAAGATTATATCCCAGACTTTCACAGTATTATTATTGCCCATTTTTTAAAGATCTGACTTCTGTGCCTCATCTACATTAGCTTCTGTCTGGGAGAGGCTGGAGTCAGCACCACACCTAAGAACTAAACAACTTCAAATTGGGGATCTTGATCTTGCATTAATCTGATTGCATTTATATAGTGCTAAATGAAGTATTAGTGCCTGAAAGGGAGGGGGAAAAACAATCCTCTACCTATTTTTACAGTTTTATGAGGAGTTGTATGCAGATGATCCCAAGAAGTATCAATCGTACCGGATTTCCCTTTACAAACGGATGATTGTATGTAGATCACATGAATCCTGCTTCTTTGTTGTCTCGTTCGCTATTTCTGGAGCACTAATTGAAAAGCAGGCTGCCTCCCTTTCTGCCTTCCAAAGGAAATCCCCTGCAGAGAGCTTCATGATGCCAATTATATCCTTCACTGCTTTTTTTGTTAGTCTTAGTGTCCTCTGTGTCATCTGTGTCTCTTTTTGATGCACAGTTTTTCTACTAATACGTCTTGCACTGTGAGCAAAGCAGTTTCTTTTTGAGTTCTACTTAATTCTGCCTCTACGCCCTGAAAAGGAGGTACGTGATGCAAAAGATGCTCAATTTTCAGGTCCACTCTTTGCTTTAAAACTTCAACACGTTTAAATTCAGCTCAGCAAAATAGAGGCCTGATCATGCAGATACTTCTAAGGTTAATAATGCCTGCAAACGTAAGTAGCCAAATCTTAGCTTAGTTTTTTTGGAGATCTCCTTACAGTGCTGACAGCTGGAACAAATAAATCTGTCTGAATCAAAACACTTACAGAGATCTGTAATTAATGTTTTTCAAATGTGTGAAATCTGAAGGATAGAATTGGTAATATTAAAAATAATTTATCTGCATAATAATTAAAAACTATAAGCAGAGGTAGCAGCACACCTGAACTTGAAGGAATATAACTTATGAGATTCCAGAGCTCACTGAGATGTGACAGCTGTTTAATTTGTATAGTGGAGCCACAGTGCTTTTAGGAAAGGTGCAGTATACGTGGTGATACTTGTAATGCAAGGAGCTCGTGGTGCCCTGTGTTCTTACTGGTGCAATGAAGAATCATACTTACAACAGCACATTTTTTAAGAGCTTCTTTTAAACACCTATTCCGGAATGGCTTTCAGATTTTTTGAGCTGGAGGTTTTGCTTCCGCAGGAGGTCACAGAAGTATTCAAAGATTTCTGGGGAGTGTTCCTTTGGAAGAAAAATACTGCTTTATTGCATTAATAGGTCTTTTAGGTGCCACGTGTTGTTCAAGAACAGAATACAAAGATGATTCTTTTAAGACCCCAGTTTCAGTGTAAGGAAGTGTGGGAAATGTGATGATGCTAAATGATAGAGAACATTATAAGATACGTTACATATTGCATGGTTTATGATTTTGGTGAATTTAAAGGCAAGTTACGTCCTTTTTGCAGACATCTCTTTCATATTCTTATAAAATGAATAAGCTTGAATAACGAGTCAGTCCTGAAGGCATGAGTAAATCATGCAGAAGTACAGGACAGCTGTTAAATAATAAAGAAAATCACGTCAGTGAGGCGTTTGGAAGAGCAAAGAGGAAGCATTAGGGAGATGTGTTTGCAGCAAAATGCCTTTTGCTGTGGGAACTGACCTAGTTTTGAGTGTTTGCAGAGTATACCTGCCTAAGAGCTTTGCCTTTGTCGTGCTACACAACTTAATAACATTTGCAATATTTGTCTTGTGTTATAGGCAGTGTACCAGCTTGTAAACCTCAGCCAGCGGATGGCAACACTGTTCAGCTTTCCTCACCACCTTGCAGATTCTAACAGCGCTGATTTTCTGTCACATTATGGCATTTGCTTATATCTTAATCTGTCTCTCATTTTAATTTACAG
Seq C2 exon
GATTTAATGGAACAACTTGAAAAGCAAGACAAAACTGTTCGCAAATTAAAGAAGCAATTGAAGGTATTTGCTAAGAAGATTGGTGAACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]