DreINT0100841 @ danRer10
Intron Retention
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:39047354-39050645:+
Coord C1 exon
chr18:39047354-39047552
Coord A exon
chr18:39047553-39050551
Coord C2 exon
chr18:39050552-39050645
Length
2999 bp
Sequences
Splice sites
5' ss Seq
CTGGTCAGT
5' ss Score
6.6
3' ss Seq
ATGTGTCTGTGTTGTGACAGGAT
3' ss Score
8.76
Exon sequences
Seq C1 exon
GCTGTTGGAGTCTCAGTTGCAGGCTCAACGTCGCTCTCATGACAACGAGGTGGAAGTTTTGCGTGGAGAGCTGCACAGTCTTAAGGAGGAGAACAACCGTCAGCAGCAGCTGTTGGCGCAGAACCTGCAACTACCTCCAGAGGCCAGGATTGAAGCCAGTCTACAGCACGAGATCACACGCCTCACCAACGAGAACCTG
Seq A exon
GTCAGTACAAACACTCCACTCGCGCTTAAATATATGTGGTTCTCAGCATCCAACTGGACTGGCCATTGACTTAAACATAACATTGTTCTTCGGTCAAAGATTAAAACTACAAAAATGTCATCACCTGACATCATAGGTGTATCATAATCATGGATTGATTTGTAGAAATGAGCAAAAGGCCTGTCACAATAAACAACATGGCCACATTTTTGGTGATAATATATATATATATATATATATATATATATATATATATATATATATATAAAAATTCACTTATTTCCTCAAAATTCTACACACAATACCACATAATGACAATGTGAAAAAAGATTTTTTGAAATTATTGCAAATTTATTAAAAATAAAAATCCTGAAAAATCACATGCACATACGTATTCACAGCCTTTGCTCAACACTTTGTTGATGCACCTTTGGCAGCAATTACAGCCTCCAGTCTTTTTAAATATGATGCCAAAAGCTTCACACTGTTGTTGCCTAATGAAGTCTAAGCTTAAAGTCAACCCCTTCTTACTTAAGCTTTCAATAGATATGATAGGATGATGTTTAATGTAATGATCATAACTGATGTGAATTGTATGTAGGCGTTTAGACATACCTAACCTGATTTCACCAAGTGACACGTGCCTGGATTAACATCTATGTCGATCCTGGAGCAACATTTCAATCAGCCAATCAGAGTTTAGGAATACGTTCACAGTTTATATTCAATTTAGGCTTACGGTTAGGTTTATGCACTTCTACATGATTGTTATCTAACTCAGGGGTTTTCAAACTGTGGGTCGCGACCCACTAGTGGGTCGCACAGTGAGGAAAGGTGGGACGTGCAACGTCACTCAGCTGCAGCTATATTTACATTGCGGTGAATCAAAACCAGTATGATAATGAAGAACAACTCTTTACAGACGATTCTGTTTTCCGTTGCAGACTTCTGATACGTCTTCAAATCAAACCAAATCTAAAAAATAGCCACACAGAAAATATGATCAGTCTTACCTCAATCTTAGTTTTATTGCTGGCAGAGGTCCAGAGGGTGAGGATGTCCTGCATTTTCTTTTATGCTTAGAAAAGCTTGCAAGTGTTTGCATGAAACCCTTAAAACTTAATGACACCTGACAACAAAACATTTTGCATGTCAACAGAGGTTGATCATATTCTCTTCTAAAAATAGAAAAGTATCTTCGTCAACAAAAAATGATCACGGTTACAGCCAGCATCCCACAAAAAGCATTTCGAGCCTCATTTTGTGCATATCGAATCGCAAAATCCAAAAAGCCACTCACCAAATACCTTTGACTGCTTTGAATGGATACATTTTTAACCTATTTTACCATATTAAAATATTATGGTGGGTCTTGTGATTGAATTACTTGCCTAGGTGGGTCCCGGAATAAAAAAGTTTGGGAACCCCTGATCTAACTAATATTCCTTTCTGATTTTGGAAATAATTTACAGTTATGGTTGGGTTTAGGGGTAGGGAATAGGTATGGATTAAATTTATGAGCAAAAATTATGTTCTAGGATCAACATACACTCACCGGCCACTTTATTAGGTACACATTTCTAGTACCAGGTTGGACCCCCTTTTGACTTCAGAACTGCCTTAGTCCTTCATGACATAGATTCAACAAGGTACTGGAAATATTCCACAGCTGCACATCCAAGCCGCTCACTGGATATTTTCTCTTTTTCGGACCATTCTCTGTAAACCCTAGAGATAGTTGTGCGTGAAAATCCTGGTAGAGCAGCAGTTTCTGAAATACTCAGACCAGCCCGTCTGGCACCAACACCCCAATCTGATGCTCGATTTGAACTGTAGCCGATCGTCTTGACCCTGTCTACATGCCTAAATGCATTAAGTTGCTGCCATGTGATTGGCTGATCAGAAATTTGTGTTAACAAGCAGTTGGACATATACCTAATAAAGTGGCCAGTTAGTGTAGCTGTTAATCCAGGATCGTATCGTACTTGGCAAAATCATGACGTGCGTTTAGATACAGGCTGAATGTCTGGATAACTGATATGAATTCAAATGAAATCCACATTTTAAAGTGGCTCAAAAAGGATATAAAAAATGGGATTTTTATATTTACACTTGTGCCAGATGTGACTTTTTTTTTTCTTTTTTTTTTTTCTGCCAGTGCCTTCTTGTCACAGTGGAGCACACTTTCCCAGTGCTCCCATTGAAAACAAATGAAAAAATAACCCCGTTATCAGTTATGTTCTGTGATTCTGAATAAATGATTTCAGATTTACTCACTAATGAAATCTTGGAGTGTGATTTTGGGTCTGAGTGCTGTGCCGTGGCGTTTGAGGGCTCGTCTGATGTGGAGGTGTTTCATTCACAGGAACTTCACTCTGATGATCCAAAGGAGTATAAAGCCTACAGAATCAGCATGTTACGCAGGATGGTTGTATGTAGGATTGTGTGTGTACGAGTGTGTGTGTGTGTATGTGTGCGCGCATGTATCTGAACACTAACTGGCACTAGTGTGTGTTGCAAAGAATCTGAGCTGCGTTGAACTCTAACTGTGTGTTTAACCCACAGCCGTGTGAATCAGCACACCTTTTTTAATGTTTCTCTCTCAATATCTGGGTGAATTTCACAGAAACCATCATCCAATATTTATATTATTAATAATTATTTATAAAATACAATATATATGATTTATTTATTTTTTTGTTTTGTTTTAAAGGATGCTTTGTTTTATTTAGCTTACTTTTTTTTTTTTTTTTTATGCATTGGAATGGAGTTTTATTTGTGAGATTCACCCAACCTTGTTTCTTTTTCTCTACTTTTTTTCTCCGTTTAATGAGTTGCATGGAGCGATGAAAGACAGAGCTGATATCTTCAGATTGTTGCAGTTTGACCTGCTTTGTCCCGATTAACTAAAATAAACCCTATTTTCCAACTCCTGCCAAAGAAACTCTAGTTGTGCTGCTAGCATGATCTGATGATGATATGTGTCTGTGTTGTGACAG
Seq C2 exon
GATCTTATGGAGCAGTTGGAGAAACAGGACAAGACCGTTCGTAAGCTGAAGAAACAGCTCAAAGTATTTGCTAAGAAGATCAATGATCTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635:ENSDART00000133618:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]