RnoINT0097238 @ rn6
Intron Retention
Gene
ENSRNOG00000058866 | Myo5a
Description
myosin VA [Source:RGD Symbol;Acc:3143]
Coordinates
chr8:82122155-82125991:+
Coord C1 exon
chr8:82122155-82122353
Coord A exon
chr8:82122354-82125897
Coord C2 exon
chr8:82125898-82125991
Length
3544 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
AATTCTCACCTTCATCCTAGGAT
3' ss Score
7.83
Exon sequences
Seq C1 exon
GCTCTTAGAATCCCAGCTACAGTCGCAGAAGAGGAGCCATGAAAATGAGGCTGAGGCCCTCCGTGGGGAGATCCAGAGCCTAAAGGAAGAAAACAACCGGCAACAGCAGCTGCTGGCCCAGAACCTGCAGCTGCCCCCTGAGGCCCGCATTGAGGCCAGCCTGCAGCATGAGATCACCCGGCTGACCAATGAAAACCTG
Seq A exon
GTAAGGAGAGGGGCAGTGCCCAGGTCTGCTGTGTGTTCTTTTAGGACAAGCAGCACTTTTTCTTTTTGGGAAAGATACTCTACTATCCCTGATAGAGACAGAAAGGAAAATATGAGTGTGTTGGTAGAAATGAATCAAAATAATAAAACTGTACCCAGGCTGCTTCTGGCAGCAGTTTCTTGAGCAGTTGAGCCCCTCAGACTTCACATAGAGTGTCTGGTCTGGCCTGGAGTGCTGGAAGAAAGTAACCTGACTGCCTGCTAGGCTTCGAATGGCAGGGAGGGAGGCCCAGCGCAGACTGTTTTCCTTTGATCTCAGGCATCCAGGGAGGATGCCATCTAGCCTGTTAGCCTACAAGCCAGGAAAGATTCTTGGTTAAACCAAACAGGAGCTACGTGTTGTCACTGGATAGAGCTTCTAAAACGGAGCAGGAGGACTAGAATTGAACTTAGCACATTCTGTTCTTTTAAGTAGAGCCTTACAGTAATGAGGAAGGTGATTTTGTTGTTCCCCTTACCAGATTCTGAATGCTGACACAGACTCCAAGGTTTTCTTTCTTCTTATTCCTTTCATTTTTTTAACCAAAATAAAATATTTTCTACAATATTTCTTCCTCTATCACATTATAACTTCGATAACATATTTGCAATTTTTAAATCTATGTTTAAATTTTTAAACATAATTTTTAAATTTTTAAATTTTGCAGATCTACTTACAGCATAAAAAATCAGTGAAGGAGTATAATTAGACATTTTTGCATAAAATCTGTTCTTTGGTGACAGATGAGAAAGGAATACCTTTTAAGATCTAGAATTGAAAGTGTTTAATTTCTCTGAAGGCCTAATTACTTAGGTTAGTGATGCTTGAGAACACAGATAGTTCTCTGCTGCCGTATGTTCGCACAGACTTTATCTAGATTCGAAAAAGTGTTTTCTTTCCAGTCTACTGCCCGTGTGAAGCTTCCTGGTAGGAATGTGGGGAAGAGCAAGGGTGGTGCATGTGCTCTTTCAGATGACGGCACCGTGCTATTGGATGGGGTGCTTTCCGCGTCAGTGAATGGTCTTTAAGTTACGTCTTACTCTCTTGTGATATAACTCACAGTGCTTATGATGATTAAGAGTTGATAAATATGTGGAATAATATTGACTGATGAGTGTTCAGATTCTTTGCTTCTGAATGCTTGCCTCAAAATGCTAGGCAGTGTGTGGAATGGGTTTTGTTTCTGGATGGCAGGTTCTCAGTTTGTTCACTAAGTTAATCAAGTGTTGCCCTCATAACCTGTCTGTACTATTACTGTTTTGTATCTAATGAAATACACTCACTCAGAAATGAACAAGCCTTACACTCTAAGTAGAAGACTCTAATTAGTTTGTTTTAGGCTATCCTTTGCAGATCATCTGTTTGTGCCATTCATTACACTGACTGCTGATTCAAAGAATATTATCAAAGTCAAATGTATGGAAGTATATGCCTTCTCAGGGTATTAGAACTTCTCAGATTTAATTATGCATTTTTTTAGGATGCACTTGAGCAGAATATTAAGGTAACCGTACATCTGGGCTTGGTGCTTCTGAACTTTTGCCTCACATGCACACATGCACATGTGCATACATACTGAACACACACCAACACGCATAGGAATGGTTTTCTTACTCCTCTAGTGCACTGGCCTCACAGGTCCTCCCCATGCTGCCTCTCAACCAGCTCCACCAGTTCCAAACAGGCCGGGGGTGCTAGCAGCCCTCCTGCCTTTCTGTGTTGCTGCCTTCCTTGCCCTTGCTGCTCTGATGGTAGCTGAGCAGTGCAGCAGCTTGGGGGATTCACACGTGAGGGAGGAGTAAAGGGCTGGAACTGAAATGTCAGCCTTCTCTGGTCACTGTGGATCCCTGCTCTATGACAACATGCTGGCCGTCACCTGTTTCATGGTCATGTCACTCATCTAAACATGGTGATGCCAGGTGACAAATTGGACCCTGGGAGTAGACATAGTTTCATTACACATGTTTTAAAGTGTTTTTAAGTTAATTTTGCGGAGAGGTAGCATTTGCTCAAAGACACAAGAAACGAATATCCATTGTACCTGTTTTTTCAGTATTTTGAGGAATTATATGCAGATGACCCTAAGAAGTATCAATCCTATCGGATTTCACTTTACAAAAGGATGATTGTATGTAAAACACAGTGCTTTTCCGTTGTCTTCTGCTTCTTCTAGCCTTCTCTAACTGAAGAGCACACTGCTGTCTGTCACTGCCCAGGAGGTCTCTTCAAAACTGTTCACAAAATCTCCTTCCCTGAGCCCACGGCTGTCTTTAGCCCGTGTGTCTTCTCTTTTGGTTCCTGTGTCCAGTGTGTTTGGTTTGTCTTTAACTCAAAGCTTACAGTGTGATGGAAGTAAATTATTTCAAAAGAGAGAATAAATCTAGGAAGCATAACCAAGCACCGGAAATGTAAGCAGCTGTTTCCTGGGACTCACTAGTGGGGGTCTGACCCACGCCTGAGCAAGCTGAAGAGTGAATCCGAGTTTTTGAACGCTGTTCTTCTCTACAGCCTAGTGACAACCACCAGCCAGCCCCACTGACTCATTCCGTCCCTTCCAAGCTTTCTTAGTCTGGTCATGCCCACTCCCCTCTTCCTTACTGAGTGTCTAACTGCCTGTCGTTTGAGAGAATTCTTTACTGACTAAAGCCAGTAGTCACAGATGTCTTACCTTCCATTTAAAAATTGAGTGACTTTTTGCATTAGTCACTCAAAGTTTGTCTTTTTAAATATATATTGTGCAAGATTTGTGGGTATCTTATATTACCCGGCATTTGAGTCTCAAGTTAGCAGTAACCCCAGAGACGAGCTTTCGCCACCAAACGCAGGCTGGCCTTGATTCTCTCAGACATCCAGATACTTGGGCTATAGTCATGTACCATCATGCTGTGTAGCAGAAAGTTCTTTGTCTTTTTTTTCTTACATTTTTGTTTGATTTGGTTTTGTTTGGCTTGTTTTTTTAAGGCAGGTAGTGGCCTTGAACTCACAGAGATCCACCCACTACTGCCTCCTGAGTGCTTTAATTAAAGGTGTATGCCAGAACACCTGGCTCATCGTACTTCTAATTCCCCAGCTTCTTCATGTTTCTTAATGGCTAAGTTTAGAACTAGTAAAGCATAGGTGCTTTACTCACGGAGGGTCAGTCTTCTCCTAAGTGCAGCCTTCCTCAAGCCTTCCACACAACTTGTTACACAATCATCAAAACTTATCTTTGCTCAGTCTCCCTTCACAGGTGACAGTGCCTCTGGGTTGTTTCCCACAGGAGTCTGCTGGGAGACTTCCATCACGCTGTAAAGGAGCTCACCACAGTGTGTTTTAGCCTTGCCCTCACTGTAGCTGCACCTCCTTTGTCTGCCAGTTTGAGCCAGGTGGTGGCTCGGCCTGTGAGCTCTTGTGCAGCTTTTATGTGAAACTAACAGTGTCATTGCTGTGATTGCGTCTGTGTACCCTTTGTGCCTGTGCTGAGACTATTCTGATCTTTGTGACATAATTCTCACCTTCATCCTAG
Seq C2 exon
GATCTGATGGAACAACTTGAAAAGCAGGATAAAACCGTCCGGAAACTGAAGAAACAACTAAAAGTCTTTGCCAAAAAAATCGGTGAACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058866:ENSRNOT00000079535:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]