GgaINT1018717 @ galGal4
Intron Retention
Gene
ENSGALG00000004624 | MYO5A
Description
unconventional myosin-Va [Source:RefSeq peptide;Acc:NP_990631]
Coordinates
chr10:8319302-8323328:+
Coord C1 exon
chr10:8319302-8319500
Coord A exon
chr10:8319501-8323234
Coord C2 exon
chr10:8323235-8323328
Length
3734 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
TCTCTCATTTTAATTTACAGGAT
3' ss Score
10.63
Exon sequences
Seq C1 exon
GCTGCTGGAGTCTCAGCTGCAGTCGCAGAAGAAGAGCCACGAGAATGAGCTGGAGTCACTGCGAGGTGAGATCCAAAGTCTGAAGGAAGAAAACAATCGCCAGCAGCAGCTCTTGGCACAGAATCTGCAGCTGCCCCCAGAGGCCCGCATTGAAGCCAGTCTGCAGCATGAGATCACCCGGCTGACAAACGAGAACTTG
Seq A exon
GTAAGGGCAATGATGTTGTTGGAGCAGGCATGGAGTCTTACAAGCTTGTCTGTGCCTGTAAGTTGTCATTGGTTTTCAGATGGCAGCCTCTTGTAAAAAAGCTGCTTGAGTGCAGCCTTTTTTTTGTTTTAGGTAAGCAAATAGAAGAAAGAAACTAATGACTACTGATTAAGTCGAATCATTTTGAGGAATTTGTTAGTTTGTGGCATAGAAAAAGTTTGCGGATCCCAGTGTAAGAGTGCTGGTTTCAACTAATGAGTTTAATCATTCCTAAATAGAATCGTCGATATGCATCGATGATAAAAAAAAATAGTATTGGCAAGCAGTGGTGTTTCTTCTGAAATATTATTTTGTTGAAAAATGCTGATGTAGTTCTTTAATGCTTCAGTGTAGCTTTTCTTCCCCTTTCCCTCCGTGCCTGAAGCTACACAGATCATCCACTGTGTTATGAGCTCCAGGTATTCAGTGTTCTGTTCCAGAAGAAGAAACTTGGTTAGAAGTTACTTGGCTGTTTGGTGTTCCTTGTTCCCTGTACCACATTTTTGTATGAAAAAACACCTTTTCCCCTGAAGGTGTATGTTCATCATGTATGGGCTAGTTCATTTCTGGGGAAATTTTCAGCCTATACTGAAAAATCACTTTATTATCACTGTTTATTAGCTTGGAGTTCCTCCGTATAATTTCTTCTTTGTAGTAGAATGCACCAGACTATGTAGGTTGCTCTGAAAGTAATGCCTCCTATTTATTTCCAGGGAAACTGCAACAAATACAAATAGCACAATAACACTATTTGATAGAGATAGATTTGCAGCTACAAAACACTGTTTTTCAATTGTCACCATCATTAGCTGTGCATTTTTACCGGCAGTACTGAACAAGAGCCTGTGTGCTCTGCTCATAAAAATCTGCACCACTGGAGGGCACCTACTGTGCCACAGCTGCAATGATAGTGTTGCTGCAGTGTACCACCCAGCACCTCACTGTGCTCACATCCACTGTTAGGTCTCCGTAAAAGTTCAGCAGGCGTTGATGAGTGAAGGAATTCAATCCCACCCCTTTGCTTCATATTTACTTCCATGTCAGACACCATTCTGTCTGTAGAGGTTCAACTTCTACTCCACACCACCAACATCAACCTCTGGCATCATGGGCCAGTGTAATGAAATAAGAGGCATTACTTTTGGAGCAGCCGTTGTACTTCAGGGAGAAAATTCAGAGCTCTGAGTGCCATCGCTTTCTCTAAACAAGCCAAAGTGCTGCTTAGAGAGCCTTTTCTGCTTACATATGTTACAGAGGTTTTCATTGTAAAGCTGTTGTCTTAGTACCGAGGTTTAGAGCAATAGCCAATTCAGCTTAATAGCTCTTAGAAAATTGATTGAAAGTCTGTTACAAATACGTACCAGCAGTAGCTGACTCCTACTGGAAAAGGTAAATGGCAAATGCTCCATCTTGGACAGTTCCTCCTGCTGCTTAGTCATGTGTTCTGAGTTTTAGCCTTTCTTCCACCAACGGAGCTACTCATCACGTTCCGAGTCCGAAGACAACAGAGTCACGTAATTACATCCCAGAGGAGATTTCTTTCTTTAAAAATGCAGTGAATGTAATTTTACTTGTTAAAACAGACTCATTTGTTAGTATTTCACTACAAATATTTGAGTACTGCAAATGTGCTCCAAACTGGGAATAGGCTTCTTTTCCAACCCTAGCCCCACAGCGCAAATAATTGACAGCTTTCCCAGATGTGATGTTCGAATGGCAGTACTTACTGCAATCCCATCTTCATTAACACAGGGAAGTGTTCTTTCCAGAGCCTTGCAAAAATTATATCCCAGACTTTCACAGTATTATTATTGTCCATTTTTTAAAGATCTGACTTCTGTGCCTCATCTACATTAGCTTCTGTCTGGGAGAGGCTGGAGTCAGCACCACACCTAAGAACTAAACAACTTCAAATTGGGGATCTTGATCTTGCATTAATCTGATTGCATTTATATAGTGCTAAATGAAGTATTAGTGCCTGAAAGGGAGGGGGAAAAACAATCCTCTACCTATTTTTACAGTTTTATGAGGAGTTGTATGCAGATGATCCCAAGAAGTATCAATCGTACCGGATTTCCCTTTACAAACGGATGATTGTATGTAGATCACATGAATCCTGCTTCTTTGTTGTCTCGTTCGCTATTTCTGGAGCACTAATTGAAAAGCAGGCTGCCTCCCTTTCTGCCTTCCAAAGGAAATCCCCTGCAGAGAGCTTCATGATGCCAATTATATCCTTCACTGCTTTTTTTGTTAGTCTTAGTGTCCTCTGTGTCATCTGTGTCTCTTTTTGATGCACAGTTTTTCTACTAATACGTCTTGCACTGTGAGCAAAGCAGTTTCTTTTTGAGTTCTACTTAATTCTGCCTCTACGCCCTGAAAAGGAGGTACGTGATGCAAAAGATGCTCAATTTTCAGGTCCACTCTTTGCTTTAAAACTTCAACACATTTAAATTCAGCTCAGCAAAATAGAGGCCTGATCATGCAGATACTTCTAAGGTTAATAATGCCTGCAAACGTAAGTAGCCAAATCTTAGCTTAGTTTTTTTGGAGATCTCCTTACAGTGCTGACAGCTGGAACAAATAAATCTGTCTGAATCAAAACACTTACAGAGATCTGTAATTAATGTTTTTCAAATGTGTGAAATCTGAAGGATAGAATTGGTAATATTAAAAATAATTTATCTGCATAATAATTAAAAACTATAAGCAGAGGTAGCAGCACACCTGAACTTGAAGGAATATAACTTATGAGATTCCAGAGCTCACTGAGATGTGACAGCTGTTTAATTTGTATAGTGGAGCCACAGTGCTTTTAGGAAAGGTGCAGTATACGTGGTGATACTTGTAATGCAAGGAGCTCGTGGTGCCCTGTGTTCTTACTGGTGCAATGAAGAATCATACTTACAACAGCACATTTTTTAAGAGCTTCTTTTAAACACCTATTCCGGAATGGCTTTCAGATTTTTTGAGCTGGAGGTTTTGCTTCCGCAGGAGGTCACAGAAGTATTCAAAGATTTCTGGGGAGTGTTCCTTTGGAAGAAAAATACTGCTTTATTGCATTAATAGGTCTTTTAGGTGCCACGTGTTGTTCAAGAACAGAATACAAAGATGATTCTTTTAAGACCCCAGTTTCAGTGTAAGGAAGTGTGGGAAATGTGATGATGCTAAATGATAGAGAACATTATAAGATACGTTACATATTGCATGGTTTATGATTTTGGTGAATTTAAAGGCAAGTTACGTCCTTTTTGCAGACATCTCTTTCATATTCTTATAAAATGAATAAGCTTGAATAACGAGTCAGTCCTGAAGGCATGAGTAAATCATGCAGAAGTACAGGACAGCTGTTAAATAATAAAGAAAATCACGTCAGTGAGGCGTTTGGAAGAGCAAAGAGGAAGCATTAGGGAGATGTGTTTGCAGCAAAATGCCTTTTGCTGTGGGAACTGACCTAGTTTTGAGTGTTTGCAGAGTATACCTGCCTAAGAGCTTTGCCTTTGTCGTGCTACACAACTTAATAACATTTGCAATATTTGTCTTGTGTTATAGGCAGTGTACCAGCTTGTAAACCTCAGCCAGCGGATGGCAACACTGTTCAGCTTTCCTCACCACCTTGCAGATTCTAACAGCGCTGATTTTCTGTCACATTATGGCATTTGCTTATATCTTAATCTGTCTCTCATTTTAATTTACAG
Seq C2 exon
GATTTAATGGAACAACTTGAAAAGCAAGACAAAACTGTTCGCAAATTAAAGAAGCAATTGAAGGTATTTGCTAAGAAGATTGGTGAACTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004624:ENSGALT00000039066:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.678 A=NA C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]