GgaINT0030093 @ galGal4
Intron Retention
Gene
ENSGALG00000003014 | CHRNA3
Description
Neuronal acetylcholine receptor subunit alpha-3 [Source:UniProtKB/Swiss-Prot;Acc:P09481]
Coordinates
chr10:3123626-3124771:+
Coord C1 exon
chr10:3123626-3123670
Coord A exon
chr10:3123671-3124661
Coord C2 exon
chr10:3124662-3124771
Length
991 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
CTCATTTCTTCCTTAATTAGATC
3' ss Score
7.97
Exon sequences
Seq C1 exon
GACGAAGTCAACCAGATCATGGAGACCAACCTGTGGCTGAAGCAC
Seq A exon
GTGAGTAGCGCTCCCCGAACCCGGCGGGACGAGCCCGGCATGAGGCGGCCACCCAATGGGGCGGCGCGGGGGGTCACACGCGGAGCCTTCGGGGCGCTCCCCTCAGCGCCGCTTTCCCGCCTGCAGCGCCTCGCGGCGCTCTGCTGCCCCCCAGCGGCGCGCGGTAACACCTCAGCACGCGGCGCGCTCCTTCCCGCGCTCGGCTGTGAGAGCCCCACAGGGGCGAGCGCGCCTCAACCGACAGAGCCACCGCCAGCCCCTCCCTCCAGCACAGCGTTTAAATACAGGGCCTACGTCGGGACGCAGCTGTTAAACTGAGCGCAATCAGCTGCAGCCTTAATTCTCCTACGCTCCGTGCAGTCTCCGAGCACCGTGTTTTGCTCTACAATGTTGCCGTGGTAGATAGGAACGTGCACAGAGGGAAGGTCGGGCATGGAGGGCTCTCAGGTCACACAGTGCTGCTCAGCAGCTCCCACACTGAGCACAACAATGCTTGCCTTCATTACAAGCAACTTCAGAGGTTAAAAATGCAATTACTTACTGTCATGGTCAGCATAACCAACTTAATAGGCAGCTTCATCTTAATCATCAATTTGGCTAAGCTGGGTTTTAATGAGCACTAATGAACACGGCTGTTACTTGACTGAATAATGCCCCCTGGGTCTGTCCTTCAGTGCTTTCACACAGCAGTAGAGCCACCTATCAATCCATTTCCACTGTCCACCAGTGCTTTTTGAGACCTAAGTTATTACTCCCATCCTACACTCCCTTCCTTTCTCACCTCATTCCATCCACTGGTACAGGGACTGAGTCACCTCCAGACCCACACAAACACCTGACATGGATGCATGGTTAAGAAACATCTGATCATGGTGGTATCCAAAATAAAACAACCCTAAAAGCAATCCCACAGCACTTGCTTTGACTCCAGTCCACAAGATTTCGATTTCTTTGCAAACTTAATGCACTGACTCATTTCTTCCTTAATTAG
Seq C2 exon
ATCTGGAATGATTACAAGCTTCGGTGGAATCCAGTGGATTATGGAGGTGCTGAATTCATCCGTGTGCCCTCTGGCCAGATCTGGAAGCCAGATATTGTATTATATAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003014:ENSGALT00000004759:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293118=Neur_chan_LBD=FE(6.8=100)
A:
NA
C2:
PF0293118=Neur_chan_LBD=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]