GgaINT0031288 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:21914654-21917856:-
Coord C1 exon
chr9:21917828-21917856
Coord A exon
chr9:21914777-21917827
Coord C2 exon
chr9:21914654-21914776
Length
3051 bp
Sequences
Splice sites
5' ss Seq
TAGTTAAGC
5' ss Score
0.39
3' ss Seq
TGTGCTCTAATTGGTTTCAGTGA
3' ss Score
6.72
Exon sequences
Seq C1 exon
GGTAAACACCCAAGGGAGAAGAGTGCTAG
Seq A exon
TTAAGCTGATGGACAAGGTTTTTACAGAACAAATGAGAATAAAGTGACCATGAGTGCACTGGGCTGACAATTAGGCTGACACTGCAGCCAAGACCCTGAGAGGCAGCAGCGGAACACCTATGCCTAGTGTGGTGCAGCCTTTGCACAGAGCCACAGTAATGGGGTGGAGTTGTGAAGAATCAGAGTGGTGAGGTTGGAGCGCCAGATGTGTATGGATGGGATCTGTGGTAACATTGGCACTTGTGTAAAGGCACAAGCTGTATGAGATCTTTGCTAGAGTGAGTTCTCCATTGGGCTATCCAGGAGTGATGAGGATATTTATCCTTCTCAATCAGCTTTGAATTTCCCATGTATAAATAACCACTATTTCCATTTCCAACTCTCACTCTTCCAGGAGAAAGAAATTTTAACACCGATGACTTTATATTTTCTCCTGTGTAAAGTCACGGTTGCCACAAGGAAGCAGACTATGACAAGACCTAATTCTCTTTCTTTTGCTGTTCTAGAGTGCACAACAAATAGGATTGGAGAACTAGACCTTGTCCTTTGCAACCTTGCAGTGAAGGTCTGGAAAGGTTCCCAGCACATGCAGCACATGCTTTCCCAAGAGCATTGTTGCTGCCTCAAATCAGTGCCTTGGTGTCGCTTTTTCAGATTGCCCAAGGAGGCTGTGGATGCTCCAACCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGCAACCCTGCACATAGCAGGGGGGTTGAAAATAGATGATCATTGTGGTCCTTTTCAACCCAGGCCATTCTATGATGCTATGATTCTATGTCCCAGGACTGCCTAGAAACAGATCTGTTCTGGGATCGTTTGGAGTTTTCCTGGTCTTCGTTTTTTGAACACAACATTTTACAGCTTGGAATAGAGTTTCATAAGATGTAGTCTGTTACCCAATAATGTTAACAAGTCAGACAATATGAGACAAATGCATAGAAGAACGAACACTAATGAGATGTTTCTAGCTTCTCCTGAAACCTGCCTGTGACAGCAAGGAACAGATATGTCAGAATGAAACAAAAGCAAGTAAAACAAGCCAATATGTGGTTGCTTTATCTTCTGCAAATCTCTTTCCTTTACAAATTTTTATCTTGTCTAGGGACTTCCAAGGCTGCTATTTTTTATTCAAATTACTACATTTTACTACCATGTACCCTATAATTTGTTGTTTGCTTGTTGTCATGTCACAGATTATTATAAATCTTGCTCTATGCTGTAATCGTTCTCAAATTAAAGCTTTGGATGCTCTGAAAACCTTTATAATATGTAGGTTTAACAGATGCTGTTTGATAGTTATTTCACTTAATTTATCCAAATAATAATAATAAAAAAGAATCAATAACTAATATTTTGTATCAGTCAGGGAACGAGTTCTTGCTTGAAGCTAAATCCTTTGTAGACAGGCAACTGTTTAACTGCAGAGCCAAGCTGTCAGCCTTGAAAGTGTCACACAAGATGAAGTGCTGCTGTCCCTTGAAAACCTATTTGCAACCTATTGTGCTGAAAGTCCAACAGAAAAATTCAGTTCTAAATCCTTAACTGTGATATTATTTTATGCTATCTTGTCAAATTCTCAGCCTGCACACTCGAGTGGCTGTGTTCTTGGGATGTCAGGAGGTGAAATGAGGAAATTTGAAGGTGTTCTGGGGCAGTGTCTTCTGTCGCCATCGGTGACATAAAATGCCACTGGCTGCATAGTGGCTACATACATAAAGAAGCTACATACGTAAAAAACCAAAACTTGGAGGACATGGGGAAAAAAATACACCACCATATTTAAATGTACCTCTATAAAATATAGGTCTTGTTCTCCCAGCACCTTCTTCTTCATAGCTATACATATATGTATGTGGGTAGCCAATGGAGCAAAGTCTAGAGGAAAACACCTTCAACTGATGTTGGCTTTCCTTCCCAGCTTCCCTCCAGAAGTTACCTTGCACAGAGCTTGAGGTGAGGGAAAAGTAATGGAGAAGTCAGGCTGCAGGCAAGTGTGGAGTACTGGTCCAATGTTTCAAATCAGTCAGTAATTGCTAAAAAGCTAAAATTGTGTTACAGCTTGAATTGTAAGGAAATAGCCTTGATTTTTAAATGGTTTAGAATGCTAAAGGACACATTTTTCAAAGGCATCCTACAAATTTGCCTACATGCTTTTATTCGCCATCAAGCACTGATGCCATTGACGTTATTGATGTAATTAGAACTGCAGTCTGGGATACCAGGCTTGTGCAAAATATCAGATTTTTGTATGAAAACTCTGGCTCTTAACCCAAATCATCCTATCCAAGCAGTCCTGGTAGGCCAGTTAGTGTATGGACAAAGTCTTTGTGCAAACACATCAGTTTGCTTCCAGCAGCCACGTGCTCCAGAAATAAACACATTAACCACAGTGAAGTCTTTGAGGTGGAGACTTCTGCAGGCACTTTATAAATGTATTTTTAAGTACTCATCACTTAGAACTGCTTATCCTTGAAATTGCATGTTATTGCTGAAAAAGAGTGAAAAAACTTGATGTATAACATTAATGCCACATGTTATTAGATTGAAGGAGGTCTTCTGGTGCTCTTCAGCGAGTATTTTCTCTGGAGACTTCTACATACACATTATTATTTGGCAAAATTCACTGTTGAGTGTGTTGATGGGTTCAAACATTGGGTTACTAATTGCTATTGTTTAGAGCAACTCTTGAAATCTGCTCAGTTGTGGTAAAATAAGGATAAAATGTACTCTCCCATCGTGCTTCCAGGGAGTAATACAACCACAATTTCTCTCAGTTTATAGTGCTGCTGATCTATGGAAAATGCTGTCCAGGATCAGAGAAAATAGCAGACAGAAAAACAACGGATTTAACCATACACCAACTCCTGTCAGATATTTTTTCAGTCTAATCTTTCACAGTACCGTAATCTCAGCTGTTGGTTGCAACGATGGCAGGTAAGACCGTTTTCAGGCACAAGCGTGACCTTTAAGCTGACAGTGTGCTCTAATTGGTTTCAG
Seq C2 exon
TGATAGACCCCTGCACAAGTGGGAATGGAGGATGCTCACAAATCTGTCAAAATGAGAGAGGAACTGCCAAATGTGACTGTCACCCAGGGCATTATCTTTCTACAGATGAGAAGTCCTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=85.7),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]