GgaINT0031293 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:21903817-21904513:-
Coord C1 exon
chr9:21904391-21904513
Coord A exon
chr9:21903908-21904390
Coord C2 exon
chr9:21903817-21903907
Length
483 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GGTCCAGGGTTTACTTCCAGAAG
3' ss Score
2.37
Exon sequences
Seq C1 exon
ATGTGGATGAATGTCGTCTTGAGAATGGCAACTGTGACCATATCTGCATTAATTCCCTGGGGTCATACGAATGCGCCTGCAAGGAGAGGTACCGGCTGGGTGCTGACCGGCGCTCCTGCATTG
Seq A exon
GTGAGTTCCTGTTGCATTCTGAATGGCTGCTCAGTATTTCTCAACTGTGAACTCAGATCTGGGATCTTCATGGGTCCTGGGATTTTGGGAGCCCAACTCGAGAGCTCTCGGATGGGTCCAGGGCATCGCTGAGGTGTCCAGATTCTGCTTTGATGGAGTCAGTGGCATGATTCTGGATTTCCTCCAGCAGCAACCTAATTTTATAACCTATTTTAGCAGCTGCTAAACTTCAGGCAAAGTTTAATATTTTAACCAACTGAAAGAAAGCCAGCTGATTTCCTATCATGTTAAGATTTCAATTGTAGTTTCTGGAAATGGGCAGCCAGCCTTGCTCTGTCTTTGTCATCTCCCAGATGAATGAGAGTAATGACCTTCACTCACTATCAACAATCACGAACTTCAGGTGGGGAAAATTAAACTCCCATTTAAAATTTGACACAGTAACAGGGATGGCTTCATCTGAGGTCCAGGGTTTACTTCCAG
Seq C2 exon
AAGAAAGAGAAATGTTGTCTTTTCTTCTCTCTTACTTTGCGCATCAAATATTGTTCATCTCTATAAACCAGAAAATGAATTGGATGCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGATGAATGTCGTCTTGAGA
R:
TGTTGCATCCAATTCATTTTCTGGT
Band lengths:
214-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]