DreINT0179332 @ danRer10
Intron Retention
Gene
ENSDARG00000005216 | zgc:158328
Description
zgc:158328 [Source:ZFIN;Acc:ZDB-GENE-070112-1202]
Coordinates
chr15:35448100-35450463:+
Coord C1 exon
chr15:35448100-35448222
Coord A exon
chr15:35448223-35450232
Coord C2 exon
chr15:35450233-35450463
Length
2010 bp
Sequences
Splice sites
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
3' ss Seq
TCTGTATCTTGCATGTTTAGCTC
3' ss Score
6.78
Exon sequences
Seq C1 exon
ACATTGACGAGTGTGTGTCTGAGACGTCAGGCTGCTCTCAGTACTGTGTCAACTCTTTGGGCTCTTATGAGTGTTTCTGTCAGGTGGGCTTCAGGCTGGACTATGACCAGAAATCCTGCTCTC
Seq A exon
GTAAGTGCATAAGTTTGACTTTCTTTAGCTGAATCTATAAACAGGGATTTGTAAAATTGTTTATCATATTTTAATAGTAATTTTAGCATCACTGAGTAACTATTCTGAGGTTTATTAATAGTTTGAGTTAATTTTATATGTCTTTAGATGTCTCTGTTTTGGTATTTTTGGTTCCAGTTAAACCACTGAGGAAATATTTCACTGGATTATTCATTCTTTCATTTTCCTTCAGCTTAGTCCCTTTATTCATCAGGGGTCACCACAGTGGAATGACCCACCAACTTATCCAGCATATGTTTTACGCAATGGATGCCTTTCCAGCTGCAACCCAGTACTGGGGAATTCTCCCATTCACACACTACGGCCAATTTAGCTTATTCAATTCACCAATAGCACATGTATTTGGACTGTGGGGGAAAGCAGAGCACCTGGAGGAAACCCATGTGAACACAGGGAGAACGTGCAAACTCCACACAGAAATGCCAACTGGCACTGCCGGGACTCGAACCAGTGACCTTCTTTCCTGTGAGGCGACAGTGCTAACCACTGAGTAACCATGCCTGAGCCACCGTTGTCTGTATCTATGTGTGTGAATGAGAGTGTATGGGTGTTACCCAGCGATGGGTTGCAGCTAGAAGGTAATACGCTGTGCAAAACATATGCTGGATAAATTGGGGCTTAATTTCGCTGTGGTGACCCCTGATTGATAAAGGGACTAAGCTGAAAAGAAAATGAATGAATGAATAAAGTTTGTTAATTTTATTTCAGCTTTAAATGGATATCAATTTAATATTGCCAGTATTGCTGACATAATATTGGGTTTTTTATTAATAACTGGAATAAGGTTGACATTTTTTATTTACATTAAAATGTTTGTTAAAGTTTTTAACTTGTGTATTTTTGTCATTTGATAGCTGTGTAACTGTTTGTGTAGATTATTCATTTTTATTGTTATTTAAATTTTTATTAAATTTTATATCAAATGAATGTGTATAGCAAGTTAGTTTTTATATAATATTTTTATATAATATTTTATTTCCGGTAACATTTACAGTATGTTATTAAAAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATAAAATTATATTTAGGTTAGTTTATTTTATCTTAATAATTATACAGTAGCTAAAATATTTTATTGTATATTTTTTATTAATTTGTATTTTTTATTAATTTGTATTTAACAATAATAAACTGTCAGTAATAACAACAATAACTGTCAGTGTTGGGGGATAATACATCACAACGTAAGTTACATAATAATTTTATTGTACTAAGCAACAGGTACATTAATGCAGTACTTTCCAAGATTAAGTAATAATATTTTAGTTACTTTTTAGTTTAGTTCATTTGCTTTTAAAAAATGAAATAATCGTAGTCACGTTGAATCCTGTATACAGTGAGAGTATGCCGAAACAGGCAGAAAGAAAGACGGCAGAGCCTTATATTTGTGCAATGGAAATATTCTTATTATTTTGAACACAATAAAGAAAAAGAAACGAGTATTTTCAGAGTGGACATTGATTTTACTTTTTAATAAGACAAAAAGTACAAAAGTAGCAAGCGCATTACTTTAAACGTTCATTAATCTGTATATACGCCATGTACAGCTCTGGGATCAGGAAATTCTCCAAAGATAACATTATCCTATAGTAATTTTGTAAGGTAATTGAAGGTAGTGTGTTGGTATACACACTCTTCTAATATAGCTCTTCTATTAAATAAAGAAGAAGAAACCCCCCCCCCCCCCCCGGAAGTTCTGACAGAGATCCAGCCTCAGCCAGGTCAGAAAAAGTAACTCAAAAGTACCGTAACACATGCAACTATTTACTCTTTTGGGGAGTTACTCAATATTGTAAAGCATTACTGTCAAAACATTACTTTCCCTAACACCGGTCACTGTGTTTTCTATTTTTCTTAAGTCTCATTGATTCTGTATCTTGCATGTTTAG
Seq C2 exon
CTCTCTATCAGAGGGAAGTGGAGCAGGAAGAGGAGGATGAAGATCTGTTCGGCAGTGAAGTTGAGCCGGAGGTTCTGCATTTGCCGAACTTACTCTTCCGCCGACCTCCTCAACTGCTGCATTACACCGCTGCTTTACATAGACCGTATGATGATGACACACACTCTTACTACCCAGAAGACACACACGACCCAGAACACAGAGAAGAGCTGACCACCATCAGCAAGAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005216:ENSDART00000066737:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.346
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]