RnoINT0081731 @ rn6
Intron Retention
Gene
ENSRNOG00000000156 | LOC100911486
Description
multiple epidermal growth factor-like domains protein 6-like [Source:RGD Symbol;Acc:6492904]
Coordinates
chr5:171556157-171556736:+
Coord C1 exon
chr5:171556157-171556279
Coord A exon
chr5:171556280-171556562
Coord C2 exon
chr5:171556563-171556736
Length
283 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGC
5' ss Score
3.38
3' ss Seq
CCTGTGTGTCCTTCCCCCAGCCC
3' ss Score
10.61
Exon sequences
Seq C1 exon
ATGTTGACGAGTGCGCCTCTGGTCACGGTGGCTGCGAACACCACTGTTCTAATCTGGCGGGCTCCTTCCAGTGCTTCTGTGAGGCCGGTTACCGGTTGGATGAGGACCGCAGGGGCTGCACTT
Seq A exon
GTGAGCTTCCCCTTAGGCACCACTACCTTCTGGGTGGCTGTTCCCAGTCACCCGCACTGTCCTGCAGTCTAGCTGGCTTTCCGCCTTGTGGGCCCCATGTGGTCCTGTCTCCTGCTGTAGGGCTGGTCACGTAAGTGATAGATAGGTAGGGCACAGTGTTAGGGGGGTCTCGGGGCATCCCGTTTCTCGATAACAAGGAAAGAGAAGGGCTGAGACCTAAGGCAGTATTGTTGCTGAGTAAGTGGGCAGCAGAGGCTGAGAGGCCTGTGTGTCCTTCCCCCAG
Seq C2 exon
CCCTAGAAGAATCTGTGGTGGACCTGGATGGCCGGCTGCCCTTTGTGCGGCCCCTGCCCCACATTGCGGTGCTGAGGGATGAGCTGCCCCGACTCTTCCAGGATGATTATGGGGCTGAGGAGGAGGCGGCGGCAGCGGAGTTGCGTGGAGAACACACGCTCACTGAGAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000156:ENSRNOT00000000169:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTTGACGAGTGCGCCTCT
R:
ACTTCTCAGTGAGCGTGTGTT
Band lengths:
294-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]