GgaINT0134961 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:987727-988514:+
Coord C1 exon
chr21:987727-987849
Coord A exon
chr21:987850-988346
Coord C2 exon
chr21:988347-988514
Length
497 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
CTCTGTGGCTGCTCCCCCAGCTG
3' ss Score
6.41
Exon sequences
Seq C1 exon
ATGTGGATGAGTGCTCCTCCAACAACGGTGGCTGTGAGCACACGTGCCAGAACCAAGTGGGGTCCTTCCAGTGCGGCTGTCCCATTGGGTACAAGCTGGATGGAGACAGGAGGGGCTGCATCT
Seq A exon
GTAAGTGCTGTGTGCTGAGCACCCTGTGCCCATCCCTCTCCAGCAGGACCATGGAAACAACCTTACATCATCAGGAGCATCAGAGTGCCTGCCCTGCATGTTCCTGAGGCTTTATAGGCTGTGCAGCCCCTGCTGTAGTGCCACGCTTAGCCTGATGGTGTGGCTTGTAGCCCTGTGAAGGAAGGGAACCAATATCTCTCGCTGATGTATGCTTGTTCCAAAAGGACATCAAGCTGAAATGCAGCCCTTAGTTTGGGTGGGTGGGCGGTCTGCCCCCAAACAAGCCAATGAGCTGGAAAAAGCCAAGTGAGAAGGAGTGGATCACTGCTGTGTGGGTATCGATGGAGTGATGAATGCCAAAGCAGTTGCACAAACCCTGTGCTGGTGTTCTGGTTTCCCTTTGTTATGGCAGAAGTTCTTCCCCATTCCCTACCCCCAAATGAGCCCTTTTCCATTTTCTCCCCCTGACTCTGTGGTCTCTGTGGCTGCTCCCCCAG
Seq C2 exon
CTGTAGAGGACTCAGTGGAAGCCCTGGATGCCCGGCGCCCCATTATCCGCCCCATTCCCCATGTGGCCATCCTGCAGGATGAGCTCACCCAGCTCTTCAGCGATGACTACGAAGAGGAGGAGGAAGAGATGGAAGCAAGAGGGGAGCACACCCTGTCTGAAACATTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.281
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
PF079748=EGF_2=WD(100=71.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATGAGTGCTCCTCCAACA
R:
AATGTTTCAGACAGGGTGTGCT
Band lengths:
286-783
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]