DreINT0095046 @ danRer10
Intron Retention
Gene
ENSDARG00000079199 | megf6a
Description
multiple EGF-like-domains 6a [Source:ZFIN;Acc:ZDB-GENE-090312-12]
Coordinates
chr23:21234922-21237481:-
Coord C1 exon
chr23:21237359-21237481
Coord A exon
chr23:21235090-21237358
Coord C2 exon
chr23:21234922-21235089
Length
2269 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TCTCTCTGTAATTTCTCCAGCTC
3' ss Score
8.63
Exon sequences
Seq C1 exon
ATGTGGACGAGTGTGCGTCTGATAGAGGAGGCTGTGAACACACTTGTCAGAATACGGCTGGCTCATATCACTGCTTCTGTCGGTTTGGATATCGACTTGGTGAGGACAGACACTCCTGCATTT
Seq A exon
GTGAGTACATCATGGGGATGTCAGTTATGCGCTGTCTTTTGGGTTTGATTTAGTCACTGTTCTCGTGAATGATATATATATATATATACATACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAGGTATGTGCCATGAAATACGAATTTCGAGGAAAAGTCCATTCATTTTAATAATTTGTTTCAAAAAGTGAAACTTGTGTGTTACATCAGTGAACTACACACAACGTGAAATATTTCAAGCTTTCATTTGATTCAATTTTAATAATTATGTATTAAAGATAATAATCAAAAATGAAAAAATCCAATGTTTCACAAATTCTAAAATTTCATCAATAAAAAGTATCTTAAACACAGGTTGGTCTTCTGAAAAGTGTGTTACCATACTGTATTATTTCCTCAGTACTTGTTGGGCCTTGTTTTGCACTAATTACAACATCAAGGCGATGAGGCATAAAGGCTATCAGCCTTTGACACAGTTGAGGTTATGGGATGATATCAGCCTTCAGCTCGTCTGCATTTTGGGGTCTCTGTTCCCTCATCTGCCTCTTGACAATAGCCAATAGATTTTCAATGGGATCAGGGTCAGGTGAGTTTCCTGGCCAATTATGAACAGGGATACCATGGTCCTTAAACCTGGTACTAGTAGCTTTGGCACTGTGTCCAGGTCCTAAGTCCTGCTGGAAAATAATCTCCAAAAAGTAGCTTGTAGGAAGCATGAAGTGCTCTAAAATGTCCTGGTATAGAGCTGCGTTGACTGTGGACTTGATAAAAGACAATGGACCCTCACCAGCATATGACATGGCACCCCAAACCATCACTGACTGTGGAAACTTCACACTGAACTTTAAGCAGCTTAAGTTGTATGTCTCTCCACTCCTTCTCCAGATTCTGGGATCTAGATTTTTTAAATGAAATACAAAATTTGCTTTCATCTGAAAAGAGGACTTGGAGACTACTGGGCAAAAGACCAGTATTTTTCTCTTTAGCTCAACACAGACACTTCTAACGTTGTTTTTTGTTCAGGAGTGGCTTGACACATGGAATCCTACTGCTGTTGCCTATGTCTTGCAGATGTCTGTACAGTATGTGGTGGGTCTTGATGCTCTGACACCAGCCTCAGTCATCCTTGCTTAACAATCCTCTCAAGGCTATGGTCATGTACCTTTTTCCAGCCAGATTTTTTTCATCCTCTTAACACTCTTTAAATTACTGTATTGTATTAATTATACTGTACTTTGAGAGCATGAAGTTTCTTTTGCAAGTGACTTTTGAGACATTTCCTCCATATGGAGGGTTCCAATGATGGTCTTCTGCACAACCATCAAGTCAGCAGTCAAGCCAGACTCTGACAATTTCAAGGCTCTACATTAATTAGCGGAATAGATTGAGACACAGGGAGTCTACAATGTTGAACTTTGTCTAGATATTCTAACTTTGTGAAATATTGGATTTTTTCATCTTTAGTCCATAATCATTTAAATTGAATCAAATGAAGGCTTGTTTTTTTACTTTGTGTGTAGTGAAATAATATATCACACAAGTTTCACTTTTTAAAAAATTTATAAAATAAATTGACTCTCCCTTGATATTTATTTTTTTTTGGTTTTTACCTTTATATAGTTGTGCTCACAATTACTGTCATTCTTGGCAGTTTTGAACAAATAAAGCTGGGTAAATAAATCTGTTCTTCCTTTTTATCTTACATATAAAAAAAATCACAAAAATCTAGATAAAGATATATTGTGATATTAATAAATGGATAAGTGTACGCTTAGTGGTATGGGTAATTCATAATTTATTAAAGACTTTACCTACTTTTACTTCATTTCATTAAAACCATCACATTGACACCATGCAGGAGACTGGTTGCCAGGAAAGCAGTCAGTCAAATAGTATATATGTATTATTGTATGTAAATAACATTTTATTTTGTGTATATTTGTTCCAAAAGTAATATACATACAATATATTACTTCATAAGACTTGCAACCCCTTTTTAGAAGCTAACAGTGATCTGAATAATGTCAATTTATTTTGTATTTGATCTGATTAATAAGCAGAATTATATCCAGCCAATTAAAAAAAAACCATTAAATGTAATGCAATATCTAATCATCCTGTGAATTCTTGATTGACTGACAGTATATTATGCATAACATCAGATGTAAATATGTAAATATATCTATTTCTCTCTCTGTAATTTCTCCAG
Seq C2 exon
CTCTCCAGCGATCGGTTGAGGAATTGCCCGGTCCAGTGGTGGTTGAGCGTCCTCTCCTTCATCTCGCTCTCCTCCAGGATTACCCACAACCCCTGGAGCGCTATCATGACTATGAGGAGGACAGTTTTGGAGAGCTGCGGGCAGAGAGCACCTTCGCTGAGAAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079199:ENSDART00000143206:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]