BtaINT0091688 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020839 | MEGF6
Description
multiple EGF-like-domains 6 [Source:HGNC Symbol;Acc:HGNC:3232]
Coordinates
chr16:50786060-50786885:+
Coord C1 exon
chr16:50786060-50786182
Coord A exon
chr16:50786183-50786714
Coord C2 exon
chr16:50786715-50786885
Length
532 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
GGCCTTCGTGCTCTGCCCAGCCC
3' ss Score
5.19
Exon sequences
Seq C1 exon
ACGTGGACGAGTGCGCCTCTGGCCGCGGTGGCTGCGAGCACCACTGCGCCAACCTGGCCGGCTCCTTCCAGTGCTCCTGTGAGGCCGGCTACCAGCTGGACGAGGACCGCAGGGGTTGCACCT
Seq A exon
GTGAGTCTCCGCCTGGCCCCATGGGACCCTGTCTTCCTGCAGCACCGGGGCCCCACTCCCTGCTTCCCAGCTGGATGGACCTCACCTCAGACCAGCCTCCCACTGTGGGATGGGCTAGGGATGGGTGGGTGGGAGGGGCTGGACAGACAGGGGCCCCCAGGCAAGGTGTTACTCAGGGGTCCCAGTGGTCCAGCTTCAGCCCCTCCCAGACGAGAGGAGGGACTTCATTCAGGGACTGAGGACCACGTCCAGAGCAGAGGGCTCTCCTGTCCCCGTGCCCTCTCCACACTTAGGGTCCCTCGGGCTAGTGCGGGAGCCGGGACAGCTGGGGCGGACGTGGCGAGAGTCAGGTCCTCAGGACCTGGAGCCTCCTCTGTCCTGAGAAGTAGGCTCACTCCTGGTGACCAGGGTGAGGAGGGGCATGGTGGAGTCTGTAGGTGGGGGTCCTGGGGTGGCACCGAGGGGTAGGGGAGTCAATCCTGACGAGGACAGGTGAGCGGCAGGGACTCAGGGGCCTTCGTGCTCTGCCCAG
Seq C2 exon
CCCTGGAGCTGCCCGAGCTGGTCCTGGACGGCCACCTCCCCCTCGGGCGCCCCCCTCTGCACGTCGCGGTGCTCCAGGACGAGCTGCCCCACCTCTTCCAAGACGACTACGTCGGGGCTGAGGAGGAAGAGGCCGAGGCACGGGGCGAACACACACTGCAGGAAAAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020839:ENSBTAT00000027771:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.207
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACGAGTGCGCCTCT
R:
TTTCCTGCAGTGTGTGTTCGC
Band lengths:
286-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development