GgaINT0031315 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:21872500-21872974:-
Coord C1 exon
chr9:21872846-21872974
Coord A exon
chr9:21872629-21872845
Coord C2 exon
chr9:21872500-21872628
Length
217 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
CTGGCACTTTCCTTTCTCAGGGT
3' ss Score
9.81
Exon sequences
Seq C1 exon
AATGTCTCCCTGGCAAGTACGGCCCCAACTGCAGCTTGGACTGCTCATGCCAGCACAACGGCACCTGCGACAGGTTCACGGGCTGCTGCCTCTGCCCCGCGGGGTTCTACGGGCGCTCCTGTGAGCACG
Seq A exon
GTGAGTACACACACCCCACACAGCCCCACCACCTGTCCGCCCGCAGGGACAAATGGGGTCTCAGAGATGTTGCTGTAGAGCAAATGGGGTTATTACTGGCAATAGTAAATATCAATTCTGTTGGCTCCCAAAGAAGGTAGCTGCAAATATAGAGGGGCTTAAACTGATCCATGTTTTTCTTCCTCCTCTTTCCTCACCTGGCACTTTCCTTTCTCAG
Seq C2 exon
GGTGCCCCCCCGGGTTTTATGGGCTGAGCTGCCTTCATGCATGTGCCTGTAAAAACGGAGCGAGCTGCGATGCCGTGATGGGACAGTGCATTTGTCCCTCGGGGTACCATGGTATCCACTGTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF079748=EGF_2=WD(100=61.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTCTCCCTGGCAAGTACG
R:
CACAGTGGATACCATGGTACCC
Band lengths:
252-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]