GgaINT0031317 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:21868828-21871855:-
Coord C1 exon
chr9:21871730-21871855
Coord A exon
chr9:21868957-21871729
Coord C2 exon
chr9:21868828-21868956
Length
2773 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
AAATACTTCTGTCCTTCCAGGCT
3' ss Score
7.65
Exon sequences
Seq C1 exon
GCTGTGCCAGTGGGCGCTTCGGTGAGCGGTGCCAGCGCCAGTGCGACTGTGGAGGAGCTCCCTGCGACCCGGCCACTGGGAAATGCCTCTGCCCACCTGGAAAGACTGGGGACAAGTGTGACATTG
Seq A exon
GTAAGAGAGTATTTCCTTTGTGCTGGAGTACATGCAGTTAAAGCAACGAGACCCATTGATTGGTCTGAGCACAACTGCGAAAGGACGTGTGCCAGCACAAAGTATTCCAGGACACACTGTTCGCAGCAAAGTATTCTCTTGCAGGTTGCCAGGTTTATCAATAGGCTGTACTCTGATTTAATCAATACTTAAATTGATGCATCAATAGGAAATCCGGGTATGGGTCTGCAGTAAAATGTCGTTTGTCACGAGTGTCAGCACAGCATAGTAGGAAGGGCTCAAGGGTGCTGCAACAGGACATGAAGGGATTGGGTCCCATGGGGGTTTTGTCACAGGGGCATTTACGGGGCTCTTCAAAGAGCTCAAAGTGTGTCCAACTCGAGGTGAGTGTGGTGGAACTGCTGCAGTGTTCCTGGCTCTGAGAACCAGCAGTAGTCTGGGAACACTGAATCCAAATAGTGTTGCCTCGTTTGCAGCACAGGAGCTGTGTGTCTGGTAAATGGTTGGCCCACAAAAGCAGAATTGTTTTGCAACAGGGTTGTAAAAATAGGTGAGCGAATTCTCCAGTGAAGGAAACCAAGCAAACTGACAAAAGCATTGAGGGCTGAGAGGCAGTAAGGACAGGGATTCTCGAGCCAGATTCTGATCTCAGTTGTGCTGGTGGAAATTTAGGGTAATCACTTAAAAGAACTGCAGTTTTCTTTTAACATGTGTAAAAAGATCCCAACAAGCAATGTACAGGGAGATGAGCATCCATGTACTAATATTGAAGGAGCACGCAAGGAACCACACTCCTCCCAATCCCCAACATCACAAAGGGGGAATATTCCTCATCCTTTTGTTCTGGGATAGGGCAGGAAACAGCTCTGAACACCCTGTTATTAATGCAAGCAAGAAGTCAAGTAAACTCTGGGAGCCTGAGGGCTACTGCAACCCCAAAAACTAAAATGGAGGTTGACTTGCTTGCTGACCTGCACCGTCCTCTTGCTAGGAACTGAGCAGCCCATCCTCCTGCACTGGTGCCATTGGGACTTCAGCCACCCAGCACTGAGCACTGTGCATCAGAGGCCTTTCCAGTGCGATTCTAGCAGCAGTGGAACACAAGGGGGAAGCTCAACACCAACAATGTGAACCGAGGTTTTGCTTCTTGCAAACTTTAGGAGTCATTTTTATTTTTCTTAAATCAGCTAGGGTCACCCCCGTCCATGAAAAGCTGTTATGGGGTAGGTTTTATTTGCATTTTTATTTTCAATTAGGCTCAGTTCATCTGTGATATAACTGTGAGCAGCTGTGTCTGTGCAGCAGCCATAAAGATAAAAGGCCTGATTTTAATTTGAACTCTGGTAAAGCACCCATTAAACAGGCAAAATGTTAATTAAAAAAAAGAAAAAGAGAGAGAGAGAGAGAGAATATAACAGACTTTTATGGGCGTTCCTTTTCTGTAGTAAATTAACATTGCAGACTTTCAAACAGATGTCTTAAATACACATTGTTATTAACATGAAAATGTGGTATTACATAAATTAAAATCAGGTCCAGAGGTGTTTGTGGAGACCTTTTCTCATAACATTTCCTAATTGAAAAGGCCGAGCTCTGAGCACTTGGGGAGGGTTCTCCCACGTGCTGGGGCTGCAGCTGATGTGGGGCTGGGGGCCTGGGTTAACCCTGTGGTGCTATGTGACAAAGGCATACTGGGTTACTTACAGCACTGTCGGTGAGGTGAGGGAGAGAAGGCTGTTGTGTGCAGGGCTCTCAGCACCCTGCCATGGGACCTGCTGGGGACTTTTCCTTCTTACCTGTGTTCCGGCATGTATAAAAAAATTGAAAGTGAAGTGAAAAACTGAATTTGAAGTGAAAATTTGTCCATAAAATGTATTTGCCCATCCTTTGCAGAGCTGGGAGTGAGACTTTTGTGAGTTTACGTTTCCAGGAGGTAACCGAATTGTACAATGTGGTATGGTGTACATACATACCTAAAATGGATTAATTTCCATTTGGAAATTGTTTGAGTAAAAGCTCTTTTCTGCTCCTTACCAATAGCCAGATAGCCCCAAAACCTCTCCTTTTGGGCTGCCAACCCCTGGATATACACCAGGGATCTTTCCCATTTCAGGAACTTCTACAGGACAGATAGTTCACTGTTTGGATGGGCTGTGCAGCAGATAAAGCTTGAGGATTGCAAGGCTTTCCAAAGTGTTGTGGCTCAATATTAGCAGTTGTAGGTGTCAAAGCAGATTCCCAGTCCCAAATCTGTATCTCCTGAGAGAAATACAGCAAAAGTATGTCAAAATTTAGGACAATTTCTTATACAGTGTAACTGTATATACATTTATACAGTGTAACTTGCCGAGGTTTTTTTAGTTTTATGTTGATAAGCATTTAACTTTAGGCAAAGTAAGAGTCTGGGTTAGAAAAGTTAACCTCACATGAAATTATATGAAGAGATTTTTTAAGAAACAATATGATTTTCAGTTCATGTGTTGAGCCTCACAAAGCTTCCCCTAGTTTGCAGAGCTCGATGGAGGTCTGCACTCTCACCAGAACCTGTGTGAGGTCTGCGTTCTCTCCCAGTGATAATCCAAGGACTTAAATGTTTAATTATTTTTTTCTAAATAAACATCCCTAATTTTCTTACTGTGCCTGCATTTTGGCCTGAATGCTGTCCTTAGTCTGAATTTCTATTTCATGCACTTTCAAGGATGCTTCTCAGTGTAGTGCAGCCATCGAGCGGGGAGAAGGATTCACCCTCTTCCAAATACTTCTGTCCTTCCAG
Seq C2 exon
GCTGCCGGTCTGACCAGTACGGCCCCGACTGCTCTCTGCGATGCCAGTGTGCCAGCAAGTCCCAGTGCAACCCATACAATGGGAAATGTGTCTGTCCAGCCACGTGGATGGGGCCAACCTGCAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458:ENSGALT00000015394:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]