HsaINT1021464 @ hg38
Intron Retention
Gene
ENSG00000242268 | LINC02082
Description
long intergenic non-protein coding RNA 2082 [Source:HGNC Symbol;Acc:HGNC:52931]
Coordinates
chr3:168908287-168910814:+
Coord C1 exon
chr3:168908287-168908413
Coord A exon
chr3:168908414-168910671
Coord C2 exon
chr3:168910672-168910814
Length
2258 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
3' ss Seq
ATTGTGTTTTCATCCTAAAGGTT
3' ss Score
7.67
Exon sequences
Seq C1 exon
TATTCACCTGGCATGTTTGGAGATGATTGCCATCAACTTTGTGACTGTGAAGGAGAAACCTTCTGCCACCCAAAAACTGAAAAATGCCTCTGCCCCCGTGGGAGAACTGGAGCCAGATGTGATGCTG
Seq A exon
GTAGGACCCAAAGCACGTCAGGACTCCCCCCTGACCCATCGTTATACAGAGATCTGTAGACATTTTCCTGCTAGAAGTGGTACTCTATTAAAGAGCATTGCCCAGAATTGCTTGATACTTTCCCCTTAGTAAGATGAGCAGGGTGTGTAGCTGTTACATCACAGGCAGCTCAAACAACGTTACAGCTGTCGGAGGACACGTGTTAAGTACTTAAAGGGACACAGTTAAATGCCCCATCACAAAGGTGATTCATAGAAATCACTGAGAATTAAGGCAATTAAGGTGTGGTCCAGATAGTATTCTTGAGACCCAAGCTTCCAGCTACTCTTTGGGAATTGAAATGTGTATTTCGTTTTTCTTTTCACTCAGAGAAATAATGACCTAAAATATAAAGTTCTAATTCTTCAGGGACTGTCTTAAGAAGAAGAGAGAGTAGATTGAGTAATTTTGAACTAATCACTTGCTACTAGACTTAATGGATGCTTATCAGATGAAGAGTTTTATATAATTCACAATAGACCTGAAGGACTGACCCTGCCACAGATATTACCCAAAATAGAGGGTTTAATCTCAGAGTTTACTTTTCTCATCTGCAACAGAGAAGGCTTGAAGCTTCATTGCTAAAAGAAGGGTTATTTCTAAATAAAGTCATGGCCTACACAGATGTCCTACAAGGTATTTTATTTTCATTTTTATTTTCAATTAAACACGGTTCATCTGTGATATTAAGTGTGAACAGCTGTGTCTATGCAGGCACCATAAAGATAAAAGATCTCATTTTAACTTGAACTCTGGTAAAGGTGCTATTAAACAGCCATAATATTAATTCATAAAAGAATATAACAACCTTTTATTGCATTATTCTCCCACCCCATTGGTAAATTAACATTTGCAGACATTCAAACAGATGTCTTAAATATACATCATTATTAACATGAAAATGTGGTATTTTTATAAATTAAACTCAGATTCTGGAGTGCTCGGGAGAGATCCTGACTCACAACTCTTTTTCTAATAAGAACACTCAATCTTGCCACCAAACTAAGTAATCCTCCCACACACTGGGCAGGGGTGTCTGGGTTGAACTTCATTTGAAATGACATAGGATTTTTTAAAATTTTTCACAAAGTTTCATGGTTTAAAGATTCAGAGCAGCATTTGCACTGCCTCCAAAGCTTCTTCTTAAAGGAAACTGTTGCTCTGTCATTTAGGAAGGGATTGAATTACTGTTTGCTAATGTTGAACCCTTGTAAAAATAATTAATTGCAAAATTGGTTTATGTTTCTATTTGCCTTATATTTATAATCTAATTAGTTAATTAAGGCAAGAGAGCTAGGCCACATCTTAACCTATGTTCATAATGCAAAATAATAAAAAAATATACATCCAACTGCTCATCTCTAACCCAGCATAAAGGATAGTGAGTCAATAAAGAAGTTTTTAACAAAAATTTGCCCAAAGTTTCAGAATTTGCCCCAGAGCCTATATCTTCATATTCACTGACATTTCCCAAATTCTCACTTTCCTGCTTTTTACTTTTTTATTAGGGCTTTCTTCTGCATATGTTTAATACCTTGCATCCACTCGTATAGTAGTGTAAAATGGGGAAAGAGCACTAGGTAAGAATTCTAAAACCCAGCTCTGCTGTTTATCAGAGATATATTATAGTAATTGAGAAGATCTTTTAAGCCATACCAAACCAAGGTTTATTTCTCTGTGGAATGCAAGAGCCTAACTCACTGCCTTGCCCACCTCACAGGTGTTAGAACCAACAGAAATACTGTATTAGAGACCCACTTTGTAAACTCCACAAGGGTAGGTGACTGTTATGATTGCACAGTTGAGTTTCTCTGATCCTTAAACATTGATAAACTGAGTTTCTTCCCAGTCCTGCCTGACCGAGTAGGAAATATGAATCTATTTTCTGTTTCCGTGAGCTGGGCTGGGCTTTCTCCTTATCCTCATAATTCTTCAGAAACAGAACTTGTTAATTCTCTACTGGAAATCAGGCTAAGAGCAAACACCCAGGCCGGGCCTTTTTGGTCAACATTTGGTTAAGCTAACACTTTCTATAATCTTCCATCATTTCTCTTTCTGTTGCAAGCACAGTGTAATTCAATTTAAAGATAGAGTCCTGTAGGACATAGATCAGGGGATCTATGGACCTTCTGACATATTTTAAGAAATGAAACAGTTGAAATTAAAGTCATTTCATTTTCAATAACATAAGCACAAATAATTGTGTTTTCATCCTAAAG
Seq C2 exon
GTTAGTCTCCTGTATTGGGCGTTCAGCATGGATGTTGCCTTTTTCTGACCTCAAGACAACTATCCAACTTTCCCTGTGTCCTTCACGATGCAACCACTAAAGCTCTACTGAAGTCTCTAATTCTGAGAAGGCACCTTAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000242268:ENST00000484765:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains