GgaINT0032053 @ galGal3
Intron Retention
Description
NA
Coordinates
chr9:14283355-14283881:-
Coord C1 exon
chr9:14283732-14283881
Coord A exon
chr9:14283639-14283731
Coord C2 exon
chr9:14283355-14283638
Length
93 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
CTGGGTTTCTGTCCTTCCAGGTC
3' ss Score
10.67
Exon sequences
Seq C1 exon
CTGTGCGAGAGCAACAGCTCACTGCCCTTCTTCAACGTGGAAGCTGCCAATGAACACCGAGGAGGGAACACTCGCGTGTCCTACGTCCAGTACGTGGACGTTGATGTGTACGGCCAGCGCATAAGGCTTGGGAAGGGTGGCGTGGTGACG
Seq A exon
GTAAGCACAAAGGGGAGCAGTGGCGGGGCTGTGCCGGGGGAGAGCCGTGCCAAAGGGATTGCTCCAACCCTGTCTGGGTTTCTGTCCTTCCAG
Seq C2 exon
GTCAACGGCGAGCCAGAGGTGCTGCCCTGCACCCCATCTGTGGGCGTGCAAGTCTCGTCCAGCGGGTTCTACACCATGGTGACAACAGACTTTGGCTTGAGAGTGAAGTTTGATGGGAACCATCGGGTGGAGGTGACGCTTCCAAGCACCTTTGGGCAGAAGGTTTGTGGCATGTGTGGCAACTACAACGGGATGGCAGCAGACGACTTCCTGAACCCTGACGGGGTGCTGGAGCCAGACTCCACCAGCCTGGGTAACAGCTGGCAGGTGTCTAATGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007208:ENSGALT00000011664:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(31.6=100)
A:
NA
C2:
PF0009420=VWD=PD(48.4=78.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATAAGGCTTGGGAAGGGTG
R:
CTTGGAAGCGTCACCTCCAC
Band lengths:
178-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]