GgaINT0032726 @ galGal3
Intron Retention
Gene
ENSGALG00000007906 | F1NJ22_CHICK
Description
NA
Coordinates
chr9:16713969-16714344:+
Coord C1 exon
chr9:16713969-16714102
Coord A exon
chr9:16714103-16714176
Coord C2 exon
chr9:16714177-16714344
Length
74 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CCCTTGGTGTGAGCCAACAGGAG
3' ss Score
-0.29
Exon sequences
Seq C1 exon
GACGTGGCCTGGAAAGCAACTGTGCACAGGACTTCTGCCAGAGCCTGGAGGAGGCGAGCCCAGAGATCCGGGCATGCGTTGAGGCCTGCAACCACATTGCCAACGCCACGCGGGAGCAAAATGACTTCAGCAGC
Seq A exon
GTGAGTTGGGGCCACATGGCACAGAGGGGTGGGGTGGGATGGGCCCTCATCATCCCCTTGGTGTGAGCCAACAG
Seq C2 exon
GAGAACGAGGAGTGGATCCTGGTGGGGAGAGTGATCGACCGCGTCTGCTTCTTCATCATGGCCTCGCTCTTCGTGTGCGGTACCATTGGAATCTTCCTCATGGCTCACTTCAACCAGGCGCCCGCCCTGCCCTTCCCTGGGGACCCCAAGACGTACCTGCCCCCGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906:ENSGALT00000012833:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(18.1=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=PD(12.8=55.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTGGAAAGCAACTGT
R:
GATCACTCTCCCCACCAGGAT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]