GgaINT0032726 @ galGal4
Intron Retention
Gene
ENSGALG00000007906 | CHRNG
Description
acetylcholine receptor subunit gamma precursor [Source:RefSeq peptide;Acc:NP_001026739]
Coordinates
chr9:15083867-15084242:+
Coord C1 exon
chr9:15083867-15084000
Coord A exon
chr9:15084001-15084074
Coord C2 exon
chr9:15084075-15084242
Length
74 bp
Sequences
Splice sites
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
3' ss Seq
CCCTTGGTGTGAGCCAACAGGAG
3' ss Score
-0.29
Exon sequences
Seq C1 exon
GACGTGGCCTGGAAAGCAACTGTGCACAGGACTTCTGCCAGAGCCTGGAGGAGGCGAGCCCAGAGATCCGGGCATGCGTTGAGGCCTGCAACCACATTGCCAACGCCACGCGGGAGCAAAATGACTTCAGCAGC
Seq A exon
GTGAGTTGGGGCCACATGGCACAGAGGGGTGGGGTGGGATGGGCCCTCATCATCCCCTTGGTGTGAGCCAACAG
Seq C2 exon
GAGAACGAGGAGTGGATCCTGGTGGGGAGAGTGATCGACCGCGTCTGCTTCTTCATCATGGCCTCGCTCTTCGTGTGCGGTACCATTGGAATCTTCCTCATGGCTCACTTCAACCAGGCGCCCGCCCTGCCCTTCCCTGGGGACCCCAAGACGTACCTGCCCCCGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007906:ENSGALT00000012833:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0293211=Neur_chan_memb=FE(18.1=100)
A:
NA
C2:
PF0293211=Neur_chan_memb=PD(12.8=55.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTGGAAAGCAACTGT
R:
GATCACTCTCCCCACCAGGAT
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]