GgaINT0032903 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P1T3]
Coordinates
chr9:15166426-15166871:+
Coord C1 exon
chr9:15166426-15166588
Coord A exon
chr9:15166589-15166721
Coord C2 exon
chr9:15166722-15166871
Length
133 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTCA
5' ss Score
0.87
3' ss Seq
AACATTTCTGTGTTCTTCAGGCA
3' ss Score
8.87
Exon sequences
Seq C1 exon
TTAACCAACATCTATGGCAACATCTACACAGTGTGGATGGGACAGACTCCCGTGGTTGTACTGAATGGATACAAAGCAGTAAAAGATGCCATCGTCACCCACTCAGAAGAGACTTCTGGAAGACCTCTCACCCCGTTCTACAGGGACATGATGGGCGAAAAAG
Seq A exon
GTGTCACAATACCGAAATACGCATATCTTTGTGATATCTAGTGAAATATAACCCAATCCAAACCCAATTTTGCTTCCTGCAGTGAAAGGATTTCCCCGCCCAGCACCGAAATAAACATTTCTGTGTTCTTCAG
Seq C2 exon
GCATTTTTCTGACAAGCGGGCACACCTGGAAGCAACAGAGACGCTTTGGGATGACCATTATACGGAGCCTAGGATTTGGGAAGAACAACTTGGAGCATCAAATTCAAACGGAGGCCTCTCACCTTCTGCACATCTTTGCAAACACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008283:ENSGALT00000013480:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGACTCCCGTGGTTGTACT
R:
GATGTGCAGAAGGTGAGAGGC
Band lengths:
256-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]