Special

MmuINT0044783 @ mm9

Intron Retention

Gene
ENSMUSG00000022818 | Cyp2ab1
Description
cytochrome P450, family 2, subfamily ab, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3644957]
Coordinates
chr16:20315028-20323079:-
Coord C1 exon
chr16:20322971-20323079
Coord A exon
chr16:20315178-20322970
Coord C2 exon
chr16:20315028-20315177
Length
7793 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
3' ss Seq
CTCTCTATCCTTGGACTCAGGTG
3' ss Score
8.18
Exon sequences
Seq C1 exon
AGTCTGATTCTAGGTAAAGTCTCGGCTCCCCAAGCTGAGTTCAGGAGCTCTGCAACGCGCCATGTGTTTCACGTCGTGTGGTTGTCTCAGCTTGTTTCCCTTATCCTTG
Seq A exon
GTAAGATTTTTAATCTTTCCTTTTGGTTATCTTGAGTATATTTAATATTTGAAAACCTGCCTACAGTACAGACATTATGATTGGATGAATAACTCTAGAACTCTGGAGCATGTGCCCCCTCTCTCTCCTTTCCCTTCAGCTGTTGAGGCTCAAGCTGTAATCCTCCATATCCACTGTTATCTAGAGGCCTGGAAAAGGTTCTTGATTGATTCTGTAGGTCTCCACCAGGGACCCTCTACCTTCCTGGCACTAGGAGAAGAATTATGGATGTAGTTACTCACAGGAGACAGGCAGCAGCCTATTCTTCTATGGCTGCATTAGAACTCCACAGGCATGGCAAGCTTTGGGGTCCTCTATGTCTCCCTTCACCTTTAGGTGTTTCCTTTTCCAGTGTTGGTTCAGAGCCTCCACTGCCCCACCTGGAGGCAACTATGAAAAGAACACTGAATTGGATACAGACACTGAATTACAGTCTTCCCACCTCTTGCAAGTGACTTTACCTCACCAAGTGTAAATAGAAGTGAATCATACGAGCCGGGCGTGGTGGCACATGCCTTTAATCTCACCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGAGAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCAAAACAAACAAACAAAAGAAGTGAAACATACTTCCCAGTACTTCATGAAGCAGTTTAGAAATATGTGTGCATGCCTCAAAAAGGGCATATTGTATTACCACAGTTTTTAGAGTAATAATGGCATGGGAGGTGGTCTGTATTTTGTCCATTCTTTTTCCAGAATTCTAAAAAGAAATGCCCCCATGGCCTAGGTTGCAGTGTGGCTGACCCTAAGGAGTCTATCAAGGGCCTGAAACAAGTTGTGGGGAGCTTTACCAAGGTCAACCATATGATACATGGAAGTCCCCTAAAAAGAACCTTGTGACCACTGCTCAGTCACTGAGGCTGAGAAATAGAGGTTTTTGTTCCTGGGGGCTTCCATGTTCCTGACACCTGCCATCTTTGAAATATGGTGGCCCAGTGTGCTGGGTGTGTCTCTGTTTTAGAAACTGAGTCCTGCCCTAAGCAGCCGGAATGCTGTAACTCTTGAGAAAGAGAGAGGGGAAGCCTGTGAAAGGTCAACACACTTGGGAGGGTTGGGCAGACATGTTTCCCAGAATCAAGGCTGTTAGAACCCTTGGGCAAGGGAGGGAGGAAGCCTGGCAAAGGCCAACACACTTGGGAAGATTGGTCAGACACATTTCCCAGTAGGGTGATAGGTTTTCCATTGTAAAGAGTTGCCTTTAAATGTTGTGTCCGCTGAGAAAGCTCTGAGAAACATGCCTGCTCCATGTAGCTGGATCGATGGTGCCCAGGTGGAATATGCAGGTATAGGATGGAGCTATTTTCTCTATCGATTCTCTCTAGAGCCCCAGTCATTGCCTCGGTTGCTGTGGACACACGCCTTCATCTACGCCAAAACCTCTCATGAAACTCTGATGTCCTCTATCCGCACCTCATGACACTTTTAAAAATTGTGGTACAAAGCCTGCCATGATAGCACTGCCTATAATCCCAGCATTTAGGAGGTAGAGTTAAGTCGATCAGGAGTTCGAGGCCAGGTTCAACTATTTAGGGTTTAAGACCAGTCTAGGCTACTTATGCTGTCTCAAAAAGAAAAAAAAAAATAGTAGTAAAAGCTAGGCAGGGTGTCACACACTTCTAATTCCAGCACTTGGGTGGAGGAGGGTCATTCACCACTATGTAGCAAATTTGAGGGCAGTCTGGGCCATTTGAGATCCTTTCTCAAAACAAAGCAAAGCAAAACCAAACCATATTAACCAGAGCAGCTTCTCCCAACGCCCCATTGGGCTGCAGTTAATGCAAAGGCTCCTCACTGCTCAGAGTGCCCAGCTCTAAATGGTTGTCTGTATCAGAGCCTTACCCTTCAGGGCTCAGGGAACATCTTGTAGAAGAGAGGGCATGTGGCAGGAAATATTAAAAATGAACCCACCAACTCCCCGGTGGGGCTAGGCCACGCTCCTATGCTCCTGCTGCTGCTGGCAGCTCTCTCCAGCTAGCCCCCACAGCATCTGACTTGCTTGTCCTGGGAGCCACTAGTTTCCTCACTGCTATAATCTCCTGTAATAATAATCTCCTGGAACGTGGTCCCACATTCCAGTAACCAAGTTGAATCACCAACCTTGTGGTTAGAAATCACAATACCCAGTAAGCCGGTAGAATTAAAACTCTTAAAGCTTGTAGTTAACCAATCAGATTTATGTATCAATAAACTCACAATTTACAAGATGCCAATACAATAACTTCAGAGCCAATTGATAATGATAAAAAAGCTCTATCCTAATGAATCTAACTTTGTGATATCATCACATCAACCTCCATTCTCCTCTCCCCTCTCCTGAGCTGCTCCTAGTCTCTCTCCCTCTTAGCTCTGCCTCCCTTTTCCCTGTCCAATCACAGGCCTCTTGCTGCCCTAATGTGATTGGACAGGGTTTTCCCTGCAACATTTCATCCTTTCTGTTTAATTAAAAAAAAAAAAAAGACTTTCTCTCAAAATATAAATTAAGTACAACAATTACCATTTTGTAATTAATAAAGTACAAGATAGACCTAACATCGAATCCAACATTTTTGTCAATAAAATAAAACACTGTCCTCTATCCTAACTTAAAAGACTATAATTTTGCACCTGACTTGTGTTCTGGCTTTAGATAGAATGCCCTCTGAAAGCCATCCTCTCAAATATGTTCTTTCAAAGTAAGTAGCCTGGGTTGGCTATGAGACTATAGTCTTCAACTCTGTCAGAAATTGAAGAACGCCTGATATTAACTGAAAATATATAGGAAGCCTAACACAGCTTCCAAACTTAGCCAATTTACAGAGACCACTGAATACCTGGACAGTCACTTACTTCAAAATGTTGGAGCATTGGTCTTCAGCCTTCTGGCCCAGGATCATCTAATGGACCTTAGAGAAACATGATATTAAGGTCTAGCCTATTCTGTCTAGGCAGAACCAGGCTGTCCTAACCTGTAATTGTGTCATTTCTTTGGACAGTATTATGTCTGTAGATGAAATGAGGCAATTCTTGCCTAGTGGCTGTCTCGCCACAACTGGAGTAACTCATAGATGGTCAATTTCTTCTTTGAATCCAAGACAGGGAAAGCTGTCAGAAGCAGACTAATCTCAACAATAAGTGAATAAATAACATTAAATGTCACATTCTGTGGATTTTTGCATTTTTGAAAACCAACTATGTAAAGTAATTTGGATTATTGTCCATTAACTACTCTCAGCTATTTCTAATTAAAATCTTGAAAAATACCCTAACAATAAACTCAGAGCCATGAATTTGCTATTTGGCCCTAAACTCACAGGCTAATCTCAGATCAGATTAAATTAACAGTTATAGAAGAACTGGGTCTAATCCTTGTACTTACAAAATTTTGTATCAATAGGAGAAATTTATACCAATGAAACCCTTGATTTTGCATCAAAATAAATTATGTACCATTTAAGAAATTATGACTTCAGCTTAGTAACAATTAAAGAGATTTCTACCAAATGAGATTATGGATCTGCAATCAATTCTAGCTATTCCTCCCTGTTCCAATATGACCATTTCTACATTCCCTAGAAAGAAAACCTATTGATAACCCTCTCCAGCCCCAAAGCCCAGGGAACTGGGTTGATGATTCTTCATAACTTCTTCAAGCTGAATATGGGCACTGAGATATTATGAAGGGGGGGAGGAGAGGGAAAAAAATCAATCTTAAAGGGACATGAAGTAATTTGGTGCTGCATTTGGGGTACCAGAAGGAGTTGGAAATTGAGAATAGAGGTAGATAGGCTTTAAGAAGTATGCATGTGTCTCTTGTGAGACTATGCTGGGGCCTAGCAAACACAGCAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCTAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCATTGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGGGGAAAAAAAAGAATCAAAATCCATTATCTGTTTAGCAGCTGGTGTAGGAAAACATTATGGGGTAGGAAAAGAGAGGGGATCAGGGGTGGGAACTTTCCTTTTTTGTCTCAAGATTTGCTGGGAGTAAACAGGGATGGTGCGTTAGAGAATGGCAGGTGGTAGATAAGCATCTCTTGAGGCCAGCCTTACTGGCACCACAGTTAAGAGACTTTAGACTATTAAAAAGAAGACTTTGAATTTCAAAAGAGATTGGATATTTTAAAGGGATTGAAATTTTAATGTAAGAATTTGTAAAGACTGTGGAACTTTTAAAGTTATTTAGATCTTAGGGATGAATAAGAAAGTAAAGGTTGAGGCTTAATAGTGATGTGTTTGTGTGTCAAGTTGACCAGGAGTCAGTTGTACTAGCAAGTTTTGTATCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATCCAACTGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGATCAAGCAGGGAGGGCCTAGCCCATTGTTGGTGGTACCATCCCTGGGCTGGTAGTCTTGGATTCTATAAGAAAGCAAGCTGAACACCATGCATACACTAGCAAGATTTTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCTGGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAACTGCAACCCTATATGGGTATGGGTTACTTTTGGGATAGCATTGGAAATGTAAATGAGGAAAATACCTAATAAAAAATATTTTAAAAAAAGAAGTATGCATGTATGACATTCTGAAGAAAAACATAAAATGACTAGAACATAGTAAAACACAATGCATACCATAAAATTTAGCAAGCTCAACTGTGTTTCAGTGGTAATACATGGTAATACACTTCTACTGTTGTGCAGCCACCACTGTCCCTCTTCTCAGATGGAAGCCTGGGGGAGGGGGCAGAGACTCCCGCTATGGCTAACCTCATATCTGTGGATGCCCTACCCCATCCATGCTCCTTTCCCAATAGTCTCTTAACTAAAATATTCTCAGTTTCCTCAGTTGGAGTGTGGCATTGCTCTGTTGTGGGCTTGGATATGAGAGTTCTGAGAGGCGTTGGCTAAACTGAGTGTACATCTCCATCACACATGAGAAACTGAGGCAAGGGGACCATACAACTCTACCCCCAAGACATTTAAAACATAAACAAAAGGCTCCAGACATGATTTTGGACAGATGAGGGGATTCAGGACAGGTGAAGAAGCCATGCTGAGCAGAACAGGTAGAGACGAGCAGGCTGGAAAGGTTCAGGAGGAGCTGCTGTGGGCCTGGGTGGAGAGGAGGCACAGGAGCCCAGCTTTACTCCACATCCCAGTAGAACACTTTGTCCCCAGAGGAGATGCCGCCACTGGCCGTTACTGCTTCTGTCCTTTTGGCTAACTAACATATTCAGTTAACTTGGGCAGAGGCCAAGAGGAACCTCCCCAAGATGGAGCCATATGGGCCACAGCAAGGCTGGTGCTCACGTAGGAAGATGTTGCAACTTGTCCCCTACTAGAGCCCTGCGGCCCTGCTGAGTGGCACGGCTCCTGTGTGACTAGTGTGACTGAGTGGATTTACTCTGCTGGTCTGCCTTCCATCACAAGCAGCCTGAGCATAAAAGGCAGAGCAGACAGCAGAAAGATGCCCGATTTGTTACTGGGAGCAAAGGGAAGAAGAGGAGGCGCAGGACAGCAGTGATGTTCTCTCTGTTCAGTGGCATGGCTTTCCTGGCCGGCTCCTGCCTGCTCCTGAAGCTTGCCACCTTGTGCTGGAGAAGGAGCCACCTTCCTCCAGGCCCATTCCCTTTCCCCCTCCTTGGGAATTTATGGCAACTAAACTTTCAGCTACACCCAAACATGCTGTTCCAGGTACGGGCGGGGTCTCAGCGTGGTTCCCTAAAGGGATAGACAGAAGAAGTCTATCCTCCCAGCCTAGGGAGCTTGGAAGTTGAAGCAAGAATTGCGGCCATACGTTGGAACGGGGAGGTCCTGGCCTTGTCACTTGCCAGCTCAGAAGCTTTAAGCCTCAGTTACCGCACCTGCCAAATGCAGGGGCATATAGGGCTTGTAAAGACTGGGTGGGAAGTGGGCTGGAAGAATGGGGGCAGGGGTTCAGGTAAGACATAAGAAGCCCATTCAAGAAACTGTGGCTGTTTATATCACACACAGTAGTAGAACATACCCGTTCCCAGGACTGATGGGGTGTGAATGCTCAGCCCCTATTTCCTGTAAATGCCCATGGACTCTGTTAGCCTGGGCTGGATTCAAGGAGTTGGTAGGTACTCTGAAGACGTATACCAAAAGTTGAGTGTTGGATTCGGAAAGGAAGGTACTCATACCCAGAGGGTGATCACAGCAAATGGGGATGAGGATCCATTCATGTAGAGCTATGGGATACCTGGTGTCTCCACAGCTGGCTCAGACTCACGGCAGTGTGTTTACCGTGTGGCTGGGCTCTACACCCATAGTGGTGCTGAGCGGCTTCCGAGCAGTGAAGGAAGCCCTGGTCTCCAACTCGGAACAGTTCTCTGGGAGGCCGCTCACCCCATTCTTCCGAGACTTATTTGGAGAAAAAGGTGAGTCTGCTCTTGCTATGAGGGAGGGAAGGTGGCTGGCCGTACATCAGTATACTCAAGAGGTCAAGGATTGTTAAGAACTGTGAACAGACAGGGCTGAACCAGGAAGACATTCTCAAACCTCATGTGAGGGGAGATGTTAAAAAAGACCAGCATAAGCCAGGCATGGTGGCACATGCCTTTAATCCTAGCACTTGGGAGACAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAACCAAAATAAGAAACAAAAAACAAAACAAAACGAAAAAACAGCATAAAAGCCCAGATCAGCCCCTCCCTGGCATCCTGGCCTTGAATGAGTCAGCTTCATATTCCAACTTCCAGTGCACTCATCCACTAATCGTTAGATGGAGAAGTGCTTCACTTCCCGGGCGTGCCTCAGAGGACCCATGTCTGTGCCAGCTCAGAAGGGCCTTGTCCCTCCTGTCCTCCTTTTAGGCCCCTTTGCCTCCTCCACTCCTGTGGGGACTTGATGCAGAATCAGATGGAGTATAAGGACAGGCATCTCTGAGCCCACCCTCAGGACTCACTGACCACCACCCCACAGTGGCCCTCTTCTCTTGGGCAGAGCAGCAGTTCAGGGCAGGTGGGGAAGGTTATTTGGGGGGTCTGCTCTCTAGGTCTGGTAGAGTTACCCAAGGAGTGGGGGCAGGTGGTCATCCTCTCTATCCTTGGACTCAG
Seq C2 exon
GTGTTATCTGCAGCAATGGGCTTACATGGCGACAACAGAGACGATTCTGCCTGACCACTCTTCGAGAGCTGGGCCTTGGCAAGCAGGCGTTAGAGGTGCAGCTGCAGCACGAGGCAGCAGAGCTGGCTAAGGTGTTTCTCCAGGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022818-Cyp2ab1:NM_183158:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
NA

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:183626077-183634037 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr1:83829922-83839961 
Chicken
(galGal4)
chr9:15166589-15166721 
LOW PSI
GgaINT0032903
([1])
Chicken
(galGal3)
chr9:16796674-16796806 
GgaINT0032903
(F1P1T3_CHICK)
Zebrafish
(danRer10)
chr20:25712089-25712403 
ALTERNATIVE
DreINT0054240
(cyp2j20)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"