GgaINT0032908 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P1T3]
Coordinates
chr9:15169550-15170189:+
Coord C1 exon
chr9:15169550-15169737
Coord A exon
chr9:15169738-15170047
Coord C2 exon
chr9:15170048-15170189
Length
310 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ATCATCTCTGTTTGTTGCAGGGC
3' ss Score
10.38
Exon sequences
Seq C1 exon
AAAGAGTTCAAAGAGAAATAGAGGCTGTTCTGGAACCTTCCCACGTCATCAGCTACGAAGACCGCAAAAGACTGCCCTATACAAATGCTGTGATTCACGAGACTTTGCGGTACAGCAACATCACTTCTGTGGGGGTCCCTCGATTGTGTGTGAGGAATACAACTTTGCTGGGCTTTCACATTAAAAAG
Seq A exon
GTAAGGAGTACATATGTCTCCAAGCTTTAGACCATTAATATTTACTATGTCTAGCACATCAGCTCCTCCAAATCCTGGCTTGGCACAGAGAATACATGGCAGCACGTCATAGATGTGAAACAAAGCTGAGTGCTCCAAACCAGAGCCCCAAAAAAGAAGATAGAAGGGTTTATTAAGCCTAGATGCACGCAGGAGAAGGGCAAGCTGAGTCCAAGCACCCGGCTGTAGACACAGGATGGCATAGCGTCTAATAGAGAGAGGAGCCAGAGAAGAACAAATACATAGAAAATATCATCTCTGTTTGTTGCAG
Seq C2 exon
GGCACGCTTGTGCTGCCAAATCTGCACTCTGTGGTGTATGACAGTGACCACTGGGCAACCCCCTGCAAGTTCGACCCAAACCATTTCCTCGATGTGGATGGCAACTTTGTGAACAAAGAGGCATTCTTACCCTTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008283:ENSGALT00000013480:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.6=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTTCAAAGAGAAATAGAGGCTGT
R:
TGCTGAGAAGGGTAAGAATGCC
Band lengths:
327-637
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]