MmuINT1008064 @ mm10
Intron Retention
Gene
ENSMUSG00000068085 | Cyp2d11
Description
cytochrome P450, family 2, subfamily d, polypeptide 11 [Source:MGI Symbol;Acc:MGI:88603]
Coordinates
chr15:82389452-82390184:-
Coord C1 exon
chr15:82389997-82390184
Coord A exon
chr15:82389594-82389996
Coord C2 exon
chr15:82389452-82389593
Length
403 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
AACTATGTGCCTTCTGCCAGGGG
3' ss Score
7.52
Exon sequences
Seq C1 exon
GCAGAGTCCAACAGGAAATCGATGCGGTCATAGGGCAAGTGCAGCATCCAGAGATGGCAGACCAGGCTCGCATGCCCTACACCAATGCTGTCATTCATGAGGTGCAGCGCTTTGGGGACATTGCTCCACTGCCTTTGCCACGCATCACAAGTCGTGACATTGAAGTGCAAGACTTCCTCGTCACCAAG
Seq A exon
GTAGGCCTGGGCCTATTACTACTTCATCATGATCACTATCCCACAAGGGCAGAAGAGACCACCACGTCCTATTTCTAATGTGCTCAAAAAAACAAAACAAAACAAAAACAAAAACAAAAAAACAGAGTTCACGCATGCTGCAGCCTTTTAGAGTCCTCAAGAAAGAGAAATGTGAAAGAAAATGGCCAAAGGGCAATTTATAGAGCATTGCACACATGGATGGTTGCTGGGCAGGTCAACCAACGGTTGATCTTTACAGGGCCCTGCAAAGTGCTGAGAGGCTCAGGGGTTGAGGTGAATGAGAGAATCCAATGTGTGCAGAGAAGTTTTGCCTGTTATCCTGGTGACCAGTGTCTAGGCAGTCCCACCCCAGTCCATGTTCAAACTATGTGCCTTCTGCCAG
Seq C2 exon
GGGTCGACCCTCATCCCCAACATGTCCTCCGTGCTGAAAGATGAGACTGTCTGGGAAAAGCCCCTCCGCTTCCATCCTGAACACTTCCTCGATGCCCAGGGCCACTTTGTGAAGCCTGAGGCCTTCATGCCATTCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068085:ENSMUST00000170255:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTCCAACAGGAAATCGA
R:
TGCTGAGAATGGCATGAAGGC
Band lengths:
329-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types