GgaINT0035898 @ galGal4
Intron Retention
Gene
ENSGALG00000003290 | PRRC2C
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr8:4752365-4753882:-
Coord C1 exon
chr8:4753261-4753882
Coord A exon
chr8:4752472-4753260
Coord C2 exon
chr8:4752365-4752471
Length
789 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTCTTTTTTTTTTTTTCCAGAAG
3' ss Score
10.47
Exon sequences
Seq C1 exon
CATCCTCCTCCTCCTGATCGTCAACTAGGACCTGGAAGGCAGGGACCCTTTCCTCCTAAACCAGTACCAGATGAAGATGAAATCTGGAAACAGAGGAGAAGACAGCAGTCAGAGATATCTGCTGCAGTTGAGCGAGCCCGTAAGCGCCGAGAAGAGGAAGAAAGAAGAATGGAAGAACAAAGAAAAGCAGCTTGTGCAGAAAAGCTGAAACGGTTAAATGAGAAATTTGGCTGTATGACAAAACCCTCCCGGGAAGACCCTCTGAAAGAGAGAGAGAGGGAGAGGGAAAGAGAAAGGGAGAGAGAAAGGGAAAGGGAGAGGGAGAGGGAACGGGAGAGAGAGCGGGAAAGAGAAAAGGAGAGGGAGAGGGAAAGGGAAAGGGAAAAAGAAAAAGAGAGGGAGCGGGAAAGGGAAAAAGAAGAAAAAGAAAAACTGGAGAAAGCAAAAGAGCAAGAAAGGGAAAAAGAGAAAGAAAACGAGAGAGAGAAGGAAGAAAAAGAGAGGGAGAAGGAGAAAGAAGAGGAGAAACCAGTGCACGAAGCTCCTGAGCCTGTAGAACCTGTGGTAACGCCTGCAGTAGAAAAACAAGAAAGTGAAAGCAGGAATAACAAGGAAGAAAAAG
Seq A exon
GTATGCTTGCATGCAAGTAGGAGTTGTCTCTCCTGAAGCTGAGCCACAGAGCGTAGTAGTAATCAAGCAGTCTACTTTCCATACCTGATTAACTTTGTGCATCTAGATCATATGTTTTCCTGGCACGCCACAGCTGCTGACTCTGTCATTTGAGCTAGACCTGTCTGGCCAGCTCATCAAAGTGTTAAAGGAAAAATTGAGTTCTGTGATTTAAGCAGAACATGAAAGAATACGGAAAAAGTAAAAGGAAAAAAAAAGACTTTTTTTTTTTCTTGCTAAAAGAGAGTCAGTGATTCGTATTGCCAAAAAAAACCAACGTAAATTATTTCAGCTGTTCTGTTCTTTAAGCAAGCCTAGAGAAGTAGACACTGAGCACGTCTTTATACTTAATGCATTTTTTTGTAGTGGAGCTTTGAATGCCTCTGTTAGATTATTCTTAATGGTGTCATCCCTTAAATGGATAAAAATAGTTGTAAAACTGAACTTTGGTTCATAAAGAAATTGATTAAATTTTAATACAGTAGTACTTCTTAAATCACACAGTAGTTGCAACATGAACTGAGCAATCATGATTATTTGAGTTTAAAGGGAACTCTGAGAAATAATGTTTTGAGATTCTGTTCTTTTAGTCTGTGTGTGTTTTGGAAACTAGAACTGTGAGGTTAGAGAAAGCAAGTTTGCTTTCATTTTAGAAAGATATGCCCTTTCTGACACTCTGGATAATGTGAAATTATTAGCTTTAAAATGCACTCTTTTTTTCCTGTATCTCTTCTTTTTTTTTTTTTCCAG
Seq C2 exon
AAGATCAAGCAGTCTTTACCCGACAAGACAGTGGTCGAAATGAGAAAGAGATTTCACAGGTGACTCATGAGAGCGAGCCAGAATCAGGATCTCAACCTCGTCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290:ENSGALT00000005208:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.817 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGAGGGAAAGGGAAAGG
R:
ATCCTGATTCTGGCTCGCTCT
Band lengths:
352-1141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]