GgaINT0035899 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:4893395-4894448:-
Coord C1 exon
chr8:4894279-4894448
Coord A exon
chr8:4893642-4894278
Coord C2 exon
chr8:4893395-4893641
Length
637 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TGCTGTTTTCTTTGATTCAGGAG
3' ss Score
9.31
Exon sequences
Seq C1 exon
AAGATCAAGCAGTCTTTACCCGACAAGACAGTGGTCGAAATGAGAAAGAGATTTCACAGGTGACTCATGAGAGCGAGCCAGAATCAGGATCTCAACCTCGTCCTGCTGTTTCCTCAGGCTATTCTAAGCAGTTCCAGAAATCATTACCACCGAGATTTCAGAGGCAGCAG
Seq A exon
GTAACCAGCTAGTTTACTAAAAGGAAGAAATAACACAGTGTCTTTTGCTTCATTCTGAATAAGAATATGACCATTTGGGGGGGGTGGAGAAAAAAAGTCCAAGTTGTTGGTTTCCAGCTTCTGTAATATTATTGTATTGGCAGAATTGGCTTTGTAGGGAGCACTTCCCATCCTTGCAAAGTACACAAGTGAGCAGAAGACAAGCGACGCTTTTAAAACTGGCTGCTTTTGGCATCAGTTACCAGAAGTAGAGCATTACCCTGTGGATACTTGTTCAATCAGAGATCTGGTGATCACTGTTTCTGCAGCTTTACATTAAAGGCCATGGCACTCGCAGATACATTTTGCATTCAGTTCCTATGGTCTGAAGAGCACTGGTCATTCACATCATGAACAAAGTATAGATTGTTCTGTATCTCAGCTGAACACTAGCAAAACTGTAGCTATTCTAAATTGTACGGTCTTTTCCCGATGCCTCCCCCTTTTCTCCTCGTTCATTCTGATTTGTTTGTGATTTATTTTCAGAATGTTTAGTATCACTGAGGTGACTGCAATCATTGTTTGCAAGGGTTATTTTAATTCTGCTCAAGTCTTCATCCTAACGTAAAGTCCTATAATGCTGTTTTCTTTGATTCAG
Seq C2 exon
GAGCAGATGAAACAGCAGCAGTGGCAACAACAGCAGCAAGGTGTAATTCCACAGTCTGCTCCCTCACAGCCTTCTAGTGGCCCTGTCCCTCCTCCCCAGCATAGACCTCTTTACCAACCAATGCAACCACATCCACAGCATCTGGCTTCAATGGGTTTTGATCCACGGTGGCTTATGATGCAGTCTTACATGGACCCACGAATGATGTCGGGAAGGCCTGCAATGGATATGCCTCCTATTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290:ENSGALT00000005210:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTGACTCATGAGAGCGA
R:
GGCATATCCATTGCAGGCCTT
Band lengths:
348-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]