GgaINT0035899 @ galGal4
Intron Retention
Gene
ENSGALG00000003290 | PRRC2C
Description
proline-rich coiled-coil 2C [Source:HGNC Symbol;Acc:HGNC:24903]
Coordinates
chr8:4751626-4752362:-
Coord C1 exon
chr8:4752304-4752362
Coord A exon
chr8:4751667-4752303
Coord C2 exon
chr8:4751626-4751666
Length
637 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
ATGCTGTTTTCTTTGATTCAGGA
3' ss Score
-8.93
Exon sequences
Seq C1 exon
TCCTCAGGCTATTCTAAGCAGTTCCAGAAATCATTACCACCGAGATTCAGAGGCAGCAG
Seq A exon
GTAACCAGCTAGTTTACTAAAAGGAAGAAATAACACAGTGTCTTTTGCTTCATTCTGAATAAGAATATGACCATTTGGGGGGGGTGGAGAAAAAAAGTCCAAGTTGTTGGTTTCCAGCTTCTGTAATATTATTGTATTGGCAGAATTGGCTTTGTAGGGAGCACTTCCCATCCTTGCAAAGTACACAAGTGAGCAGAAGACAAGCGACGCTTTTAAAACTGGCTGCTTTTGGCATCAGTTACCAGAAGTAGAGCATTACCCTGTGGATACTTGTTCAATCAGAGATCTGGTGATCACTGTTTCTGCAGCTTTACATTAAAGGCCATGGCACTCGCAGATACATTTTGCATTCAGTTCCTATGGTCTGAAGAGCACTGGTCATTCACATCATGAACAAAGTATAGATTGTTCTGTATCTCAGCTGAACACTAGCAAAACTGTAGCTATTCTAAATTGTACGGTCTTTTCCCGATGCCTCCCCCATTTTCTCCTCGTTCATTCTGATTTGTTTGTGATTTATTTTCAGAATGTTTAGTATCACTGAGGTGACTGCAATCATTGTTTGCAAGGGTTATTTTAATTCTGCTCAAGTCTTCATCCTAACGTAAAGTCCTATAATGCTGTTTTCTTTGATTCA
Seq C2 exon
GGAGCAGATGAAACAGCAGCAGTGGCAACAACAGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003290:ENSGALT00000005208:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]