GgaINT0036062 @ galGal3
Intron Retention
Gene
ENSGALG00000003424 | E1C2D6_CHICK
Description
NA
Coordinates
chr8:5384987-5386217:+
Coord C1 exon
chr8:5384987-5385154
Coord A exon
chr8:5385155-5385667
Coord C2 exon
chr8:5385668-5386217
Length
513 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CTCCTTCCTTTCTCCCCAAGGTG
3' ss Score
10
Exon sequences
Seq C1 exon
CCCAGCCGAACAGCAGTGGCCCTGGGGGGCTGGAGGGGCTTATGAACCCCTACACTGCTCTGCAACCCCCACAGCAGCTCCTGGGCATGGAGCAGGTCTACAGCTCCGACCCCTTCCGGCAAGGGCTCACCCCCCCACAGATGCCTGGAGACCACATGCACCCCTATG
Seq A exon
GTAAGGCTGTAGAGGGGGGCAGGCCACAAATCCCCTGGATTTGCGCTCTTGCTTGTCCTCACAGTGTCAAAGGGTGGGCTGCATGACGGGGGTGCAGCAAGTTATGGGAAGGCAGCAATCTCTGCTGCCGTAAATCCCCACAGTGCAGAACTGAGGGCACTAAGGTGGCCAGCACCATCAGGGCACCGCGCTGAGCAGCTGGACTCAAAGCCAAGGGGAGTAGGAAGCAGGAAGCCCTGGTAGGAAGGTTATGAGTGCCATCTCCTCCCTGATGGTGCCACCTCCCTCCTAATAGTTCCACCATCTCTCTGCTGATGCCATCCCAACATCTCTGATGGTGCCAACACCTTTCTGATGATGCTAATCCCTATGGGTTTAGCACCCTGGCATGGGACAACACCCCCAGAGCATCTCAGCAGGCTCTTGGTGTCCCAGTAGGAGCCGGCTGCAGGGGCTGGGAGCTGCAGCAGCACGCAGCATCCCTCCAGCACTGCTCCTTCCTTTCTCCCCAAG
Seq C2 exon
GTGCTGAGCCCCTCTTCCATGACATGGACAGCGACGATACCTCACTGAGCAACCTGGGTGACTGCTTCCTCGCCACAGCAGATGCGGGGCCACTGCAGACACGGGCGGGGAACCCCATCGACCACCTGTACTCCATGCAGAGCTCCTACTTCACCTCCTGAGCATGGCAGGGCCCTGCAACGGGACGTCGTCCCGCAACATTTTGTAGCTCGGGATGCCCAGGGACCCAATGAGTTTTGGGTTGCATAGTTTCATGTTTCTCTTANGATCCTAGGGTTAGGGGCAGGTTGGGCAGCTGGCGGGTTGGATTCAGGTTGCCGTGCAGATGTAGAAGCCTGGAGACGTCTCCCCAGGATGTGGGGCTGGGTGTACGTGTGTGGCACATGTGTGTGCGGAGCCGTGCGGCTGTGTGCGGGGATGTCCCGCCAGATTGTATCCACAAAGTTTATTTCTAAGTCTATCAGAAATTTACTGTACAGCGAAAGTAACTTTATTTTCAGCGTGAACCATATTTAAGGAAATACTCAATGCACTTAAGTTATAAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003424:ENSGALT00000005411:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=0.679
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGCCTGGAGACCACATG
R:
ATCTGCACGGCAACCTGAATC
Band lengths:
358-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]