GgaINT0036702 @ galGal4
Intron Retention
Gene
ENSGALG00000005940 | GFI1
Description
growth factor independent 1 transcription repressor [Source:HGNC Symbol;Acc:HGNC:4237]
Coordinates
chr8:13087760-13091104:+
Coord C1 exon
chr8:13087760-13087925
Coord A exon
chr8:13087926-13090004
Coord C2 exon
chr8:13090005-13091104
Length
2079 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTAACACCTTTTGCTTGCAGGTG
3' ss Score
10.08
Exon sequences
Seq C1 exon
GAACGCAGCTTTGATTGTAAGATCTGTGGAAAGAGTTTTAAGAGATCTTCTACTCTGTCCACCCACCTGCTTATCCACTCGGACACCCGGCCCTATCCCTGCCAGTACTGTGGGAAGAGGTTCCACCAGAAATCTGATATGAAGAAACACACCTTCATTCATACAG
Seq A exon
GTATGTCTTGCAGCTGCTGGTGTTCAGCTTCAACTATAGGGGCAGGTCTCTGAAGTGGTCTCTCTGCAGCAGCCTGTTCCTCCTCAGCCGGGACAGCACATGCACCTCCCTGTGCTTCTCATGGGCCCTGCTGTGGTTCACGCTATCTGAGCTCTACTTGTGCAAATGAAGGTGATTTGAATGTGGTTTCATGAACGGCAGCTGCAAAATAACCCAAATCCTCGCAATCCAATCAGTGCTCCCTTAATAGGATCTACCAATGTTTGTTTAAATGGCTTTTGTGTAAGATGATTTGTAGAGTATTCTTGTGACCTTGATTTACAGCTGAGGTCCCTGAACAATGATAGGTGAATTCGACTGCAGCATCTCTTCCTCCAGGATCTACCAATTCACAATAGGAACAAGAGGAGTCTCCTCCTCCAGGTCAAACAGTAAACTGGCGGTCCCAGGGTCCAACTCTTAGTCTAAATATTTGTTCAGAGATTGATTGTCTGCACTTCCACCCGGACTTTCTGAGAAAGGGCTGCAGCCTGATACAGAATGGAAAGAGAGGTGCAGAGTTCTCAAGTTTCACTGTTAGTAATAAACATGGAAACTAATAAAGTGCAGGTGAATCACAAAAGGAAATTGTTTTAAAAATATTGCTCAGTGAGAAGGCATGTTTATCAGAGATCTGTAAAAGTAAATTTTACTTTACATCCCTTCACCACGTTCATTTAAGGTAGAGGGAGACGAATGATGTGTGAGATACAGAAACATCTGTAGGCACAAAATGATAGCTGCAGTGACCTAGCCCAAGGTTTGGATGACCAAAATTCTGGTTCCTGAGAGTGGAATATTAGCAGATATCAAGAGTGAAATATTGAAGTGGTAAATATGTAGAAAGATGGCATCGTATATAGTGCTGCTGGGTTGTGATTTGTCTAGATCGCAAGCAGTGAATGATAGTACTTCCACAAGTACTTCTCCACGAGATTACTGCTGAATGAAAATGAACTATTTAGGAAGAGAAGTGAAAAGTATTTTCACAGTAACTTTTTCAAATGAGATTTCAACCAAATGCTGAATGGGCCAAAACAGTCTTTGGATTATTATTCTGATGTCACAAACTGTCTCTGGGCTGTTAATTGATAATATAGAACCAGATCCTTAACTGAGTTAGGGAAAATTTCATATGCAGCGTCAACTTGCAAAATGTGCTGGAGGCTCAGTTCACACAGATTTTATTTTTCTAAGAATCTGATTTTCAACAGTACAAAGAGTGCTTGTTGCTCCAGCTGAAGTCAGCGGGCTTTGCAGGTGCAAAGCCATTCTGAAAATCAGGCTTGGTTTTGTGGTTGGGGTTCCCTTTTTTTTTTTCCGTTATTTGATAGTAAACACTATGGAAATGCAGTGAGATCCTGCTCCTATGGAGACCAGTGGAGTTGTGCCACTGACCCCTCTGTGAGGGAAGTTCAGAGGGTGGATATATTCCCATTTCCATTATTTGCCAGGAGGAGAACTTCAGGACTCGCTTGGAGTGACTGCTAGCATTTCAGAGCGAGGACTAGAGAGAAGAGTAGACCACTGTGTAAGGTTTCACTCAAGGGCCTCATCCTCCTTTGCAGGCAGGCCCCAGCTCACTGGTTTTGGCTTAGCAACATCCATCAATCTATTCCTCTTGCACCCAAGTTGATGCCATTGACTGATGTCAGACAGTCATCACAAACTTGGGTCTTCCCAGGAATTCCTGTTGTTTCTAGGAAAAAAATTTAAATCACACAGAGGCTGTGCAGCCAAATACCAATGTGTTCACAAGCTGTGATGTCTTCAGAACACTCTTTGCTTCGAGCTGCTCCCAGGACTGTATTGGGGCAATGCAAGTACAGCCAGATCTGTGCCTGCTAAGCCACGGTGCAGGCACAGCTGATGACTCAAAGCAGCCAACTGCATGATTTTAGTAAGAATAACTTTTTTTGTAATCATGTAGGAATCACTTCAGTTAGCTCTGAGGCCCGAAGTACATTTCCTATTTGCTCTGACCCTGAGTGTGCAGCACGTTACCCCTTTCACACCTTCTTTAACACCTTTTGCTTGCAG
Seq C2 exon
GTGAGAAACCTCACAAGTGTCAGGTGTGTGGAAAAGCCTTTAGTCAGAGCTCCAACCTCATCACTCACAGTCGGAAGCACACAGGATTCAAGCCCTTTGGCTGTGATCTGTGTGGCAAAGGCTTCCAAAGAAAGGTGGATTTACGGAGACACCGGGAGACACAGCATGGCCTCAAGTGAGCCCTGCAATGCAGAAAGCACCTACAACACTAGGAGAACAGACTCCCTTGGCTTTTCCGCTGGACCTGAGCCCTGTCTGTAGAACGGACCCTGGCATTACCTTCCTGACCAGGAACTTGGAAAGAAGAGGACAGGGCCGTGCATTGGCAGCTCAACCAACGTGACTGTGAGAGTGGAAATTAAAGGTTGGGGTTTCTATCTCTTGTCCTCTGTTTCTGAAATAACACTGGAAAATAAGCCTTTTAGATACAACACCTGTTACTCTGAAGATGGATAAGCTACCAAATACCTGTAAGCTGGAAAGTATTTCTCCCATGGCCAAGATAAAAATCCTAATGTTTTCAATAGCTTGAATTATTTTGCACGGATACGTGGGTATAACAGTGTTTACATGGTACTCACAGAGAGCAGTCAGTAAATGGCACAGGTGGTGCTTGCCTTGCTTGAGTTTCAGTGCTGAAAGGCTTCACTCTTGGTTTCCTGTCAGGAAAGCCTAGAGGATCTGGATTGAAGTGTGCAGTTAGACATATGGCTATTTTTGAAGCTGAGGCACCAGCTTGGGCCTGCTTCTGCTCTCACATATTCTGGTGTAAATGAGGAGTTGCATTGACAGTTAGGAGGAGACCCCTTTTATCTCCCAAAGCTATCTCTGTGCCTAAGCAAGGCCTGGCTGTGTGTGTTTGAGGCTTGTGGGGTTATGTCTTGCTACATCTACTGGTGGAAAGGAAGCTTGTGAAAGACAACTGGAAAAGCCAAAGCACAGAGTTATGCCTTATAACTAGAAACCCACCTAAGGATTGGTCCTGACTGAGAGCAGGGGCACAGGGGAAGCAAAGACTTTCAATCCGGAACAATTGTTGTCTTCTGCACTCAGTCTTGTTATAAATAACTGGAAAATAGCTACTCAGTAGTCCTTTGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005940:ENSGALT00000009558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=25.0),PF134651=zf-H2C2_2=WD(100=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]