RnoINT0064789 @ rn6
Intron Retention
Gene
ENSRNOG00000002042 | Gfi1
Description
growth factor independent 1 transcriptional repressor [Source:RGD Symbol;Acc:2680]
Coordinates
chr14:3064618-3068371:+
Coord C1 exon
chr14:3064618-3064783
Coord A exon
chr14:3064784-3067120
Coord C2 exon
chr14:3067121-3068371
Length
2337 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGGTCTCCCATCCTTGCAGGTG
3' ss Score
11.34
Exon sequences
Seq C1 exon
GAACGCAGCTTTGACTGTAAGATCTGTGGCAAGAGCTTCAAGAGGTCATCCACACTGTCCACACATCTACTCATTCACTCGGATACCCGGCCCTACCCCTGTCAGTACTGTGGCAAGAGGTTCCACCAGAAGTCAGACATGAAGAAACACACTTTCATCCACACAG
Seq A exon
GTGAGCTAAGGCTGGGCTTGCAGGAGATACCTGGAGATGACTCCCCTCCAATGTTCTGTCTCCAATGAGTTCTCCCCGAGAGGGAGAGGAACATTGGTTTGTCCTTGGGTCTGAAGGAGTATCTTCCTCTATGGTAACAGCTTTGCTGCATCAAGTCCTCCCAGGGGGTCAACGTAAACGTTTTCTAGAGATGTCAGGATTCATATAGGTCACCCAGGCTTCATTTTCATAAGGCTCACTTTGAGTGGAGAAAGAAAGGCAAGTGTTCCCAAGCTTCCTGCTGTCTGTGTTGACAACTCCAGGAGACAGGAGCTGTTTCTTCAGCCACATTTTAGAGATGAGGAAGTCAAGGCTCGGAAGGATGAAATAATGCGTCCAGGATTACAGAGTTCAAGCTCAGGTTCGTTGGTCTGAGCTCTCAAATTCATGTAGTCTGGACTTGTTTCCTGTGTAGCAGACTTTCACAGCTGTGGGAGTTGGTTAAGGAGGATTCGTTTGTTGTTCTTTTTGAAACATCAACAATTTTGTTCCCCAACGGTGACAATTCCTTACCTAGTACTTTGGAACATCCAAGTTTCAAATGGTTCATTCCCCTTTGGTTTTTTTCCTGCTGCTCCACACAGTAAATTGGGATCCTCTTACTCAGACAGCGAGTGATCTGTCAGTCAGTTTCAGTTCTCCTGTTTCCAGTCTGGGACACCTTCCTTAACACTTCAGGAGCAGATGGGTGGGCTTACTCTCAGGAGCTTGTGAACTAAAGCGATCCTTTAAATCAGACCACAGTGGGATACAGTGGTACACAGGAGGCAGAGACCGGTAGAGACCTGTGAGATGGAGGCTAGCCTTGGCTACATAATGAGTCCTAGGCCAGCTGGGACTATACAGCAAGATCCTGTATTTAAAAAAAAAAAAAATCACAGTGCCTTCAGGACCCCACAATTAATGTTAGTAAGTATTTGTGAACAGTGTAGACATTTGTATCAGAAAACTCAGGCAAAACAGCCTCGGTTTAATCATGTCCCCTTGACTGAAGTTTCCTTGTAATTCACTCTTTATAAGTTGCTTGCGAAACTTGTCAAAGTGCATATGGAACCTTGGCTGGATGGCCAGTTAAGTCTTTATGAAACGTTTATTTAATTAAATGATTATTTAAATGTTTTAATAAACCTTGGGTAGAATTCATTTCTCAGACATATTTGATTCTAGAGGGACAGGGTAAGTTTTGTGGGGTGAGTCTTTATCAAGAAATCTTGAGCACGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCTCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAAAGAAATCTTGAGCACAAAGAGAGATGGACGTTCTTTAGAAACCAGCAAACAGGCACTTTTCGGTTTGATTCCCTCTAGGTCAAGTACCAACCATAGAACCATGAAGGGATTATTTGGGAACATGTGTCATTTCCTCAAATTTTAACCAGAGCACAAGACCAGGAAAGACAAAACCTGTTGGTTTTCTTCCTATCGCCTGCTTTTAAACAGTTTCCCTCTATTGTTATCTATTGATCTGTTGTGAAGCGTTGACATATTAAGAATACTGTGATTCAAACCTCGAAAGGAAGAAAGAAAGAAGTAAAAGGTAGAATAGACAACCTTAGGGGTTGGGGATATAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCTCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAAAGAATAGACAACCTTAGGACATTATTTGTGGCTCGAATGTGGATTTTTAAAAATTTAAGACATTGGACAAACCTGTGTTCTTCAAGAGCAAGAAGGAAGACAGCTTCACTGGTCACACAAAACAACACCCACTTGGAAACTCAGATTTGAAAACTTCCTCTGATGAAAGCAGTCACAGGGTCTGTAGGACAGCCCCTCCCACCTCTTGCTGAACATCTGCTCTGGGGGCCCTGTGCTTCTAAAAGTTGGCAGGCTGGTCCTGGGGTGGATTCAGCTGGGGAGGGCACGTGGCCTTTACTCAGTTTCCGTTTAGCAGGAAACCGTTTGAGACCTCTGTCTGGGAGCCTCCACTCAAAAAGTCTCCCTTCCACCTGGTACACCCGTGGCTTACTGGTACTAAGTTGCAGGCCAGGAGTTGGTTCATGTTGCAAACCATCACTCTCCAATGTCGTGAAAGTCTTAGGCAGCTGCTAGCAAGAGCACAAGGGTCGCAACGGGTCCCTCTCTAGCTTTATCATAGGCTCATACTTCCTGCCCTTGGTCTCCCATCCTTGCAG
Seq C2 exon
GTGAGAAGCCCCACAAATGCCAGGTGTGTGGCAAAGCCTTCAGTCAGAGCTCCAACCTCATCACTCATAGCAGAAAGCACACAGGTTTCAAGCCCTTTGGCTGTGACCTGTGTGGGAAGGGCTTCCAGAGGAAGGTGGATCTCAGGAGGCACCGAGAGACTCAGCATGGACTCAAATGAGTACCCTGGCAGTCTGCAACACCAACTGTCTAACACTACTGTGAGGGATGTCTTCCCTGCCTCCCTCCAGCCCCTTCTCAGGCCCTGAGTCCAGTGTGCAAAGCTCATCTTGGTTATTCCCCTTCGTCTTCCTTCCCGGAGCTCCTGGAGGAGATGAACTCCTGTTTCTAAGGTCAGCCCAGTGTGGGATCCACAGAAATCGTTTGTGCTTTGGGCTTCCCTACAGCTGAAGCCGGGAATCAAATGAGATCTTGCACCTCCCAGTTCTTCCCTTTTCTGCCCTTCTCACAGGCGGGGAAGAACTCTGGGCAGCTGCTAAAAGGGGAGGCATCACCGCTTGAACTTTGGACACCACCGATGCTTTTATTGAGAAAGACTGACCTTTCTGGGGAGACTGCTGACCTCTTTGTCCTCCACCAGACACCGGTTTAGGGAAGGAAACGTATCCCTTTGAAATCATCAGAAGCACCATCAGGCCTGCCAGGAGAAGGAGCAGGAAAAGGCGGACTTGGCGATGAGAGGGAGTCAGAGGTCCCGTGGAGCCAATCAGAGTGGGTGAAACGGCAGAGGAGCAGCTCCTCTCAGAGGAACGGGCTCCTCTTTTACTCAGCGCGTGGTTGTTGGCCACAGGTTATCAGAGTAAAAAACCGCATTAGGTATGGGAGAGCCAGAGGTTAAAATCGACGCTCCTAACCCCCAAAAGCTATCAGTAGGACCCCAACATAGCTAGAACCCGTGTTCTCCGCCTCCAAGGGAGTTCTGAAAAAGGCCACACAAACATTCGAACTTCTTTTTGACACTTCTGGAGTTTTTCAAGCATAAACGAAACAGAACTGGAGAGTTATTTCAAAAATTCATGAGCAAATCCAGTTTTTATTGTTAGGTGGAATTTTATAAGATGCCCAAGCTGGCAGGTGTGGAGCAAAGGCTGTGGCCTCAACTGCCGCCCCTTATCATCTAGGAAGAACGCATTTCCTGTGCGGGTGTAAATGTTTCTAAATCTCCTGAGTGCATTGTGAACTAGCATAATCATATTTATTAGAATGTTGTTTTAACTTAATAAAGTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002042:ENSRNOT00000002807:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.186
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=41.1),PF134651=zf-H2C2_2=PU(38.5=17.9)
A:
NA
C2:
PF134651=zf-H2C2_2=PD(57.7=25.0),PF134651=zf-H2C2_2=WD(100=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]