GgaINT0036885 @ galGal3
Intron Retention
Gene
ENSGALG00000002001 | STXBP3
Description
NA
Coordinates
chr8:1289136-1289285:+
Coord C1 exon
chr8:1289136-1289142
Coord A exon
chr8:1289143-1289200
Coord C2 exon
chr8:1289201-1289285
Length
58 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAAG
5' ss Score
-2.8
3' ss Seq
TTTTTGAAGATACAAAGCAGATG
3' ss Score
-4.75
Exon sequences
Seq C1 exon
AAATGCA
Seq A exon
GTAAAGAGTAGGAAACTAAAAAATCAACCTGAATGTTCTTTTTGAAGATACAAAGCAG
Seq C2 exon
ATGGGAAGGACAAGGAAGCAATTCTGGAAGAAGATGATGAGCTTTGGGTGAAGATTCGGCACAAGCATATTGCAGATGTAATAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002001:ENSGALT00000003116:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(0.4=100),PF0263810=DUF187=FE(2.9=100)
A:
NA
C2:
PF0099518=Sec1=FE(5.6=100),PF0263810=DUF187=FE(40.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]