HsaINT0161437 @ hg19
Intron Retention
Gene
ENSG00000116266 | STXBP3
Description
syntaxin binding protein 3 [Source:HGNC Symbol;Acc:11446]
Coordinates
chr1:109321908-109325139:+
Coord C1 exon
chr1:109321908-109322032
Coord A exon
chr1:109322033-109325043
Coord C2 exon
chr1:109325044-109325139
Length
3011 bp
Sequences
Splice sites
5' ss Seq
CAAGCAAGT
5' ss Score
2.32
3' ss Seq
GTGCTTCTGTCTACTTGTAGATA
3' ss Score
10.24
Exon sequences
Seq C1 exon
GGTAAAACTCATTCACAGCTCTTAATAATTGATCGTGGCTTTGATCCTGTGTCCACTGTCCTGCATGAACTGACCTTTCAGGCAATGGCATATGATCTACTACCAATTGAGAATGATACATACAA
Seq A exon
GCAAGTATAACTTGAAGGGCATATAAAGGGCATATACAAACAGGATAGAATATGAGCATTTAATGATTTATATAGGCACCAGAAATCTGAAAGCCCCTATAACCTTTTCTATTCAGAGACTTTATCCTTCTCTTATTCCTACAGTTATAGTCTTTGACAGATAATGTTGACCTTGTAAATTAAAGTGTAATTTGATTGCTTTGGAGCATTTTTGGTGTGTTTGCTTCCTTAACTGTGTGTACAGTAGAGCTACATTTAAACACAGGGAATTTGGCCCTTTTGCTTTTAAAAGTAAATACCAGGCTCACTATCATTGAAGGAGAAACCATATTCAAAATTGTTAGGCTATAATTGTTCTGAATCATACATTCAAAAGTGTATGTGTCTTATCAACATAAAGTATTTTAAAAGATTGGAACACTAGAAAACTAAATAGGATGGCTATTGAGGACAACAGGCATAGTTTTACCATTTTGGTACCTTCTACTGAGTTAATCTTGGTATAAACATATTTACTTTAAAAGTAATGTCAAATAAAAACCTAAATGAAAAATGAAATAGTTTTCTATCAAGGAATCATCTTACTGTATCTCTGTATCATTTATGGTGTATGTGTTACATACATTACAAATGTTATTTGATGTCATGATTTCTGAATCCAAACTGGTATTTGTCAGCTAAGATTTACTGCTTGAGTACAGTAATAAAAATGAAAATAGTTTTCTGAAATTTTATGTTTAAACTAATTTGTTAGTTTTAAGATACAGACACTTGTGATAGTTATGATACTGTTTTTTTTCTTAAATATTGTTAAAATTTGTATTTTCTATTGTATTTTTATTTGCATTCTGGTCAAATCTTGGTTTCTGAGTTTTTCTCTGTATTATCTGTATTAATGTTAGATAACATAGCTATTTTTCTAATATAAAAGTTATTTTAAGCAGTTTATTCAGAGGGGATATTATTTACCTCTGTTACCCTGTAGGTCTCTAAACTTTTAAGTAGACTTATTTTTTAAAAAGCTACTATACTCCCTTCTTTCTGAATCAAAAACATTCAGAGATAAGAATTAGATGGAAGTAAAGCTCCCTGTGGTTTGTGCTCCATCACAATTTTTTTTTTTTTTTTTTTTTTTTTTAGTAGAGGCAGGGTTTCCCCATGTTGGCCAGGCTAGTCTTGAACTCCTGACCTCAGGTGATCCCCCTGCCTCGGCCTCCCAAAGTGCTGGGATTGCAGGGGTGAGCCACCACGCCCAGCCTTCATCACAGTTTTTTATGGAAACAGAATACAAAGCAGCAGGAAGCTCTAAGTGTCCAGATTCAAGTTTTCATGTTGGTGCCTTCTTTAAATTTACTTTTTTTTTTTTTTCTTTTTTTGAGACAGAGTCTTACTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGATCTCTGCTCATTGCAGCCTTCGTCCCCTGAGTTCAAATGATTCCCAGCCTCAGCCTCCCAAGTAACTGGGACTACAAGTGTGCACCACTGCGCCTGGCTCATTTTTGTGTTTTTAGTAGAAATGGGGTTTTGCTGTGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCACATGATCCACCCACCTCGGCCTCCCAACTAAATTTACTTTTAAAATGGGATATTCATCACCTGAGTATTGTCAGGCTTGTTACTCTTATCTCTGTTTACAGATCACTTATAAGTCAAAGGTATTGTGTAAGAACAAAGTGGTATTTTAAATGACAAAAGGGCTTTCATCCTTAGTGCAGCCTTATATAATTGAGCACAGTGATTCTGTCTTTGGTCATCTGTAATCCACACAGGTGGATGGTTTTATAGATTGATGTGTAATTTGTGGGGGTTATAGAAACGATTATATTCATATAGCAAAGTCTATATGTATTATTTGTAGTTCAGAGCTAGGAAAACTCAATGCAGTCCTTCCTGATCTTGACTCAGGAAATCAGTAGTTCCAAGGATGATTCAGTCTTGTCTAGTTCCACAAATGGAAGGAGGGTGTCTGCATAAAAAGATAAGGGGAATCAGTCAGGAAGCCCATTTTGAATAGCTTCATGAATCCCTTAAATTGTTGCTCACTTCAGCAGAACTCATTAAAGCTATCACAATTTTTATGGCTTACATTAATTTTTTTTAATCTCATTTTCTTTCTCATTCTGTAAAGGAGATGTGGTTATAGGGTTGGGGGAGAATAAAGAAACAGATGATAAATGTTTGTGAATTTTGTACCAATTCTGAAACACCTTCAATATTTAATAGGTTATATTGGGGAGGATATTCCTGTTTTGTTTTGTTTGAGTCAGAGTCTTGTGCTGTCACTCAGGCTGGAGTGCAGTGGTGCGATCTCTGCTCACTGCAAACTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCAGAGTAACTGGGATTACAGGTGTGTGTCACCACACCCTGCTAAGTTTTTGTATTTTTTTTTAGAGACAGGGTTTCACCTTGTTAGCCAGGCTGGTTTTGAACTCCTGACCTCAAGTGATCCGCCCACCTTGGCCTCCGAAAGTGCTAAAATTACAGGCGTGAGCCACTGCACCTGGCCGATATTCCTGTTCTTAATGGAAATTTGATAATTGTACTGTGGGTTATTAGCACATCAAAACAATGTTGTAGGGAATTAGAACACAAAGCGTTAGTATATTGAGTCTTGTTCTTAAAGTTAACTGTAGGACGTTGAATTTTTTTTATAAAGTACAATTTTGCTGAACTAAAACTCTAATAATGGCACCTAAACTGAATATTTGAAAATGTCTTGGTAGGCTTAGGACTTATTTTTAATGTAAGGATAGCAGCGTGCCTTAGTTTTGAGTAGGTATTCATTACCCCCCTAAAATAGTGGATTTTACTTTTCAGTTTCTTGAGTTGTGTCTTGAAATTATTGTTTGTAAAAATGTTTCTTTTGATTTTGGAGGGAAAAAAATCAAAAAGTTTTAGTGCTTCTGTCTACTTGTAG
Seq C2 exon
ATATAAAACAGATGGAAAAGAAAAGGAGGCCATCCTTGAAGAAGAAGATGACCTCTGGGTTAGAATTCGACATCGACATATTGCGGTTGTGTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116266-STXBP3:NM_007269:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0099518=Sec1=FE(7.5=100)
A:
NA
C2:
PF0099518=Sec1=FE(5.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)