GgaINT0037815 @ galGal3
Intron Retention
Gene
ENSGALG00000002182 | F1NVB5_CHICK
Description
NA
Coordinates
chr8:1671612-1674492:-
Coord C1 exon
chr8:1674290-1674492
Coord A exon
chr8:1671731-1674289
Coord C2 exon
chr8:1671612-1671730
Length
2559 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCTATTTCTCCTCTTCCCAGTGT
3' ss Score
7.66
Exon sequences
Seq C1 exon
AAGAAGAAGAGGCATCGGCCGCCGAGCGCCCCACGGTCCCGCTAAACCTGTGCTGCCGTGTCCAGGTGCCGGTGCCGCGGACGGACACGGAGCCCCCAGCCCGGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAGGCCCTGGGACTCGCCCGGTCGAATGGGGAACAGGGGCAGATGCCAGAAAACATGCAAG
Seq A exon
GTAAGGGGGGAACTGCACGGCGCTCCCCCTCCGCGCACGCTCGGCTCCCCACCCCTGCAAACCGCCACCGCGTCCTGCCAGAAAAGTTTAGGGCTGCCGCCAGCGAGCTCCGCCGAACTCGCGCCTTCGCGGCTCGGAGGGACACCGGAGCCCGAGGCATCGGAGCCGTACCGAGGCAGGGCCCGGCCGGGAGCCTTGCCCGGGGGTGCAGACGCGCGCGGGCCGCTGCTCGGGGACACCGCCGCGGGTCGGAACGGCGCGGGCGTCCCAGCCCCGCTCCGCCCGAAACTATCGCTAAGTTTATGGCGGAGGAGCCGCGCGGTATAGTCTCGGGGAGCAGCCCGCGTGCCGACCCCGGGGCCCGAGGGGACGGCCGCCACCGGCGCCTCGCGGGCTCAGCGCAGGTGGCAGCGGCCGCGGTGCGAAACTTCGCCCGGAGCCTCGGCGCGCGTGAATCGTTTCGAGTCCCTCCGCACTGACGGCGGGACGCCCGAGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCGGCGGGATTTCATGCCCGGGCGGGGTAGCTCCTCGCGGTCCCCCATCCAGGGCTCCTCATCGGGGGCGCTTCGGGCGGACTACGGTCGCTCCGCCGCCCGCGACCCGCGGCAGCCGCGGGGCTACCGGGAGGGGAGGCGACGTCCCGAGCGCTGTCGCTGGGCGCCCGGCGCCTCCCGCGAACGCTGGGAAACCCTCCGCCGCCGCCGACCCGATGTCCTGGGAGGGAAATCGGCGACGCCGCTCCGGGAGGACGCGCTTTTCGTGAATCGCCCGCCGGAGCTGCCGAACGGGCTCTCCGGAGGGAGCCCGACTCGAGCGACCGCGCTCCGCGCCTGCCTTCAGCCCCGTGTGCGACCACCGGTCGCCTTCACGGCCCCTTCCCCGAGCGGCCCGAACTCGGGGCGCCCAGCCCCTGGCCCCCAGGGACGCCGGTGCAGAGCCGGGACCCGCTCCTCGCCCGCGCCACCGGGGCCGGGCAGCAGCGCCGAGGCTGAGCGCGACGCCGTGCCCGGCCGCGGCACGCCGGAGCTGCGGGCAGCGCTCCCGCGGCGGCTCGGGGCCGGGCTGCGGAGCGGAGCCGGGGGCGGCGGTCGCCGCGAGCCCACGAGCTCCTGCTTAGCAAGTAAGTAACTTGACTGCAACGCGGCACAGAAGTTTTCGGCTGCAAGATACAAGCCTAGGCTAAGTAAATATTTGCAGGCTGATGTTGAAAGAAAACTTTAAAGGAAACGAACCGAGTCACTTTAAATACGGCGGTGACGCTTCATCTTTTCATTGCGCTTTTTTAAAGCCCGTTCCTGATCGCTCTCGGATTTAAACGAACTCATTTTGTTTGTGATTCCCTCGGCTACGCGCTGAGTTAAGAGCACTCCGTGAACATAAATACTGAGGAGCCGAGGGGTTCGGCTTCACCCGCTCAGTGCCGTACGGAACTGCTGCTGGGCAGAAGCCGCACGCTGCAGTTCAGCCGTACTCTGAAACACAGAACTTTCCGCAGTTCTCAGTGCTGTACTTTTAAGAGAACGGTTCCTCTACATGAGAACAGTTGCAGAAAAAAGGGAGTTGTTAACGTAAATCCTAACAGAATGTGCTATTTCTCCTCTTCCCAG
Seq C2 exon
TGTCTCAGTTTAAAATGGTGAATTACTCCTACGACGAAGACCTGGAGGAGCTGTGTCCGGTGTGCGGAGATAAGGTGTCGGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002182:ENSGALT00000003418:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010513=zf-C4=PU(32.9=57.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]