GgaINT0037815 @ galGal4
Intron Retention
Gene
ENSGALG00000002182 | NR5A2
Description
nuclear receptor subfamily 5 group A member 2 [Source:RefSeq peptide;Acc:NP_990409]
Coordinates
chr8:1657875-1660281:-
Coord C1 exon
chr8:1660144-1660281
Coord A exon
chr8:1657994-1660143
Coord C2 exon
chr8:1657875-1657993
Length
2150 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCTATTTCTCCTCTTCCCAGTGT
3' ss Score
7.66
Exon sequences
Seq C1 exon
GTGCCGGTGCCGCGGACGGACACGGAGCCCCCAGCCCGGCCCGCAGCCGCCTTGTCATGCTGCCCAAAGTGGAGACGGAGGCCCTGGGACTCGCCCGGTCGAATGGGGAACAGGGGCAGATGCCAGAAAACATGCAAG
Seq A exon
GTAAGGGGGGAACTGCACGGCGCTCCCCCTCCGCGCACGCTCGGCTCCCCACCCCTGCAAACCGCCACCGCGTCCTGCCAGAAAAGTTTAGGGCTGCCGCCAGCGAGCTCCGCCGAACTCGCGCCTTCGCGGCTCGGAGGGACACCGGAGCCCGAGGCATCGGAGCCGTACCGAGGCAGGGCCCGGCCGGGAGCCTTGCCCGGGGGTGCAGACGCGCGCGGGCCGCTGCTCGGGGACACCGCCGCGGGTCGGAACGGCGCGGGCGTCCCAGCCCCGCTCCGCCCGAAACTATCGCTAAGTTTATGGCGGAGGAGCCGCGCGGTATAGTCTCGGGGAGCAGCCCGCGTGCCGACCCCGGGGCCCGAGGGGACGGCCGCCACCGGCGCCTCGCGGGCTCAGCGCAGGTGGCAGCGGCCGCGGTGCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGGGCGGCGGTCGCCGCGAGCCCACGAGCTCCTGCTTAGCAAGTAAGTAACTTGACTGCAACGCGGCACAGAAGTGCTGGGCTGCAAGATACAAGCCTAGGCTAAGTAAATATTTGCAGGCTGATGTTGAAAGAAAACTTTAAAGGAAACGAACCGAGTCACTTTAAATACGGCGGTGACGCTTCATCTTTTCATTGCGCTTTTTTAAAGCCCGTTCCTGATCGCTCTCGGATTTAAACGAACTCATTTTGTTTGTGATTCCCTCGGCTACGCGCTGAGTTAAGAGCACTCCGTGAACATAAATACTGAGGAGCCGAGGGGTTCGGCTTCACCCGCTCAGTGCCGTACGGAACTGCTGCTGGGCAGAAGCCGCACGCTGCAGTTCAGCCGTACTCTGAAACACAGAACTTTCCGCAGTTCTCAGTGCTGTACTTTTAAGAGAACGGTTCCTCTACATGAGAACAGTTGCAGAAAAAAGGGAGTTGTTAACGTAAATCCTAACAGAATGTGCTATTTCTCCTCTTCCCAG
Seq C2 exon
TGTCTCAGTTTAAAATGGTGAATTACTCCTACGACGAAGACCTGGAGGAGCTGTGTCCGGTGTGCGGAGATAAGGTGTCGGGGTACCACTACGGGCTGCTCACCTGCGAGAGCTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002182:ENSGALT00000003418:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.681 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0010513=zf-C4=PU(32.9=57.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]