GgaINT0038228 @ galGal4
Intron Retention
Gene
ENSGALG00000002451 | KCNT2
Description
potassium channel, sodium activated subfamily T, member 2 [Source:HGNC Symbol;Acc:HGNC:18866]
Coordinates
chr8:2744093-2747012:+
Coord C1 exon
chr8:2744093-2744273
Coord A exon
chr8:2744274-2746847
Coord C2 exon
chr8:2746848-2747012
Length
2574 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CTGACACGTATCTATTACAGTTT
3' ss Score
7.08
Exon sequences
Seq C1 exon
TATTTGTGGAATTCAGCATCTGGAACGAGCAGGAAACAAGCTGACTCTCTTTGACTCCCTTTATTTCTGCATAGTGACATTTTCCACTGTGGGCTTTGGGGATGTTACACCCAAGATATGGCCTTCAAAGCTGCTTGTTGTCATTATGATCTGTGTTGCTCTTGTGGTGTTGCCCATACAG
Seq A exon
GTAACTGTGGATATATTTTTTTTCATTTTCTCTTTAGAATTGTTTTTAAAACAAAACAATAACCCCAAAAACACTCTTTTGCATTGCATATAAAATATAAGAAATAATAACCATGTCCTGTACCCTATATTCTTTTCCTAATTTTTTCTTGTTTTTGTTTAGCTTAAATGTATAATATAAAATATAGTACAGATTTATAACAAAATATTTAGCACTAAAGCCAGTTTTCAATTGCTGGTGAAAGATTTCTGTTCCAGTCACGTATCACGGAGCCCTTCTCTTCATCCTAGGTAATTTAAAAAACACAGAAAACAACAAAACAAAAACATAAAACCAATCAACAACAATAAAAAACAGTACCCTGCACTTTATGAGTATAACATTTCCTCTGCAGGCTTTCCCTGTTTCTAATCTTGATTCTCTCCACTTCCTCTCATGTTCTTACAGTTCAGTGCTAACTTAAAAAAAGAACTCATTAAATCTGCAACTCAAGCAAATTGTCTTCACATCTGTGTGTGTTGGCACACACTGATCCAAGTGCACATTTAGGAATTTTTGGTGCCTACATGAGCTTAGGTTGATTTATGAAAATCCAAGTATTTCACGTAATCAATCAGTTTCCTTAAATTTGTACCAGACATTTGTCAGCTCACTAGCAAAGGCTTGACTGACACTCTCAGACTACAGGGCAGCCGTGCCACAATGCTAACTGTCTCATTCTTGGTGATGATCCAAAACTCGTGGCCACAAAAAGGAAGTGTGGGGAGACATCATGCATGCTTATTGAACTTACAGCAGACCTAGCAGGCCTTGAAGCTCCCAAGTTTCTCATACAGCTTTGATTTCCACACTTCACTTCTTTGATTGCAAACTAAGCCTCAATTGTGAGCAGACAATACAGAAACCCTGTGAGGCTTGAAGCTCAAGCTGTCAGCATTAATTTCCTTGAAATTATCTGACCATTTAAATTATAGCTAAATATTTAATGTCTGCGTATGCAAACATGTGCACTAATATAATTATATTCCCACTCAATGACAGTTTAATAAAATGGATGTTCTGCTTGAAACTAAGATGTGGTTTAAGAAATTTGGAATTTCCACAGAAATGGAAATTTCATCATTAAAGTACTTTTAAGGTACACTTAAACACCAAATCTATGCATTACCTGTAAATAATCTGGAATCTACTGCCATTTCACAGCAATCTAAGTATTATTCACTATTTTATTTTTACATTTTTGTAGTGATGAAGAGGCTTTATAGTTTTCTACACACAGAATTAGGGAGGCATTATCTAGAATCATAGAACCATAGAATATCCTGAGTTGGAAAGACTCAAATGTCTCACTTCCCAAAGATCACCAACACTTGGCTCCAGACAGGACCACGCAAAATCCAAACCGTATGTCTGAGAGTGCTGTCCAAATGCTCTGTGAGCTCCAGCAGCTTGGGGCTATGACAAGTGCCCTGGGCAGCCTGCTCCATGCTTGCTACCATCTGGGGCAGAACCTTTCCCTAACCTGCACCTGGTCCTTCTTCCAACACTGCTCCATGCTGTTCCCTCAGGCCCTGTTGCTGTCAGCAGACAGCAGAGCTCCCCATCAGGGATTAGCCTGATCTAACCCCATTTACTACAAACTGTGATCTCTTAAGCTTTGTCTTTCTACTGTATTAAATAAATTATTATTCACAATAAGAATTGCGAGAAAAAGCTGATACCACAATAGACATATAGTTGAATTGAGCTCAGTATTAAATGCGTATTACTTAGTACCGAACACTTTGGGATGGTATTTATGAATTATATTAAAAGCACAGACATTAATATTACAACATTATCTTTAGTTTAAAGGATTCTGGTTAGTGGAGCTATGTTTTATATTCCTAATAATTCTTTCGTATTTTCTAGCTTATTACAAACTAGGCTTCCCTTTCATAAGAGTACAAAACAGATTTTACTGTTAGCCTGCATACATCATTCAGATGGCAAATGCAAAATTACAAAATTATCAGCTGCCATGTATTTAAGTGGTATCTATATGTATAAGTCATATTAGTGAGTATACTAATTGGATGGTAATAAACAGATACGGTCACCTTCAGAATACTATAAAATTTCTGAAGACAGTCACTGCCCAAAGTAAAATGGTGCTTCTATCAAAGTATTTATACTCATATTAACCTAAGCATATGAAAACTTAACTTTTCATTTGAGGGAAGCATTTAGATCACAGGGCACTGGAAAAACAGCTCAGAGATCTGAAATATACGAACAAGATAGCAAACAATGTAGTCTTCACTCTTTTTGAAAATTTTATGGCTGTGTGTAATCACATGATATTTCACTGAAGTTATTCTGCTATTTGCAATAGAGACTGGCCACACTTCCACATTTTTCTGTAATCCTACTATTGATCCACATAACAAGAACTTTTTACAAAGAAAAATACATAGGGTGCTAAGAGCATAATTCAATAAAGGCATGATCTGAACAATGCAATGCATTTAGGTTGTGATACACTTTTACTGCACAGCTGCTTGACTATATTTAACTGACACGTATCTATTACAG
Seq C2 exon
TTTGAACAGCTGGCGTATTTGTGGATGGAGAGACAAAAGTCTGGTGGCAACTACAGTCGACACAGAGCCCAGACGGAAAAACATGTTGTGCTGTGTGTCAGCTCTCTGAAGATTGATTTACTTATGGATTTCTTAAATGAATTCTATGCTCACCCTAGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002451:ENSGALT00000003864:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0788511=Ion_trans_2=FE(71.4=100)
A:
NA
C2:
PF0788511=Ion_trans_2=PD(9.5=14.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]