Special

GgaINT0038539 @ galGal4

Intron Retention

Gene
Description
selectin P (granule membrane protein 140kDa, antigen CD62) [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr8:3697108-3697616:+
Coord C1 exon
chr8:3697108-3697293
Coord A exon
chr8:3697294-3697430
Coord C2 exon
chr8:3697431-3697616
Length
137 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
GTGCTTCTTTTACTTTTCAGCCA
3' ss Score
8.59
Exon sequences
Seq C1 exon
CTGTCACCTGCCCGGTGCTCAGCGCTCCAGAGCACGGAGAGCTGAACTGCTCCCACCTCCATGGGAACTTCACCTTCAACTCCACGTGTGACTTCTCCTGCCAGCCAGGGTTTGAGCTTGCGGGGCCACAGAGCCGTGAGTGCACAGCCATGGGGAACTGGACTGGGGACACCACACAGTGCAAAG
Seq A exon
GTAGAGCTGCTAGTAAAGGTGCTACTGGCCTGAGAACAGCCCTGGGATGCTCTCTGCTGCATTAGCCTTCTCATCCCAACAGCTGAGCCTTGCAGCTCCCTGGCTCCTGCTTAAGGTGTGCTTCTTTTACTTTTCAG
Seq C2 exon
CCATCAGCTGCTCAGTGCTGAGAGCTCCAGAGCATGGAGAGCTGAACTGCTCCCACCTCCATGGAAACTTCACCTTTGGCTCCATGTGTAACCTTTCCTGCCAGCCAGGGTTTGAGCTCCTGGGGCCGCAGAGCCGTAAATGCATGCCTACAAGAGCCTGGACTGGGGACACCTCACGATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643:ENSGALT00000004163:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCCACGTGTGACTTCTCCT
R:
AGGCATGCATTTACGGCTCTG
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]