HsaINT0147183 @ hg38
Intron Retention
Gene
ENSG00000174175 | SELP
Description
selectin P [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr1:169603026-169607134:-
Coord C1 exon
chr1:169606949-169607134
Coord A exon
chr1:169603212-169606948
Coord C2 exon
chr1:169603026-169603211
Length
3737 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCTGCCATGCCCATGATAGCCA
3' ss Score
4.16
Exon sequences
Seq C1 exon
CTTTGCAGTGCCAGGATCTCCCAGTTCCAAATGAGGCCCGGGTGAACTGCTCCCACCCCTTCGGTGCCTTTAGGTACCAGTCAGTCTGCAGCTTCACCTGCAATGAAGGCTTGCTCCTGGTGGGAGCAAGTGTGCTACAGTGCTTGGCTACTGGAAACTGGAATTCTGTTCCTCCAGAATGCCAAG
Seq A exon
GTAAGAGTGTATTCTTTCTAACATCATGGAAATAAATTGTAGGCAGTATTTTTAAAGGCTGGATTTTAGAGGTGACAACTATGTAAGATCCACCTTGAAATGGACTGGAAAATTCATAAATACTCTCACTCATCCTCTTGTCCTATAACCCAAGGATCCCAAATGCAAATGCCTCCGGGGGATAGGCAGATTACACAAGTGTCAGGATGTCTGGCCATAGACAGTAGGGCATGGCCCTTGCTAACTCCTTATCAGGGTCTTTACCCAGACCTGAAGGCTCCTGCCACAAACCAGGTAAACTCTTCTCACCTGGCCAAACATGGCATCTGGAAAGAAGACCAGGTGGGAAAAAAATTGCTTCAGAGTGGTTGTCCCAAGGCTGGTCTGGCACTTCTAGGAACCACAGGGTATAATGGTAAAATGGGAGGGGCAGAATTTACAAGTACCCAGTTGCAAACACTCCAAGATCTGTATAAAATTGGAGAAATAGACTTAGAATAAGGTGAAGAGTGATAGAAAAAAGAGAAAAACTAATCTGTATACTGGAGGTTACGGGATTCTCAGAAGAAAGAAATGTGTGGATTCAGTATAAACATTCTATCTGCATTGTACTTGATATACATACATTTTTTGAGACGGAGTCTCACTCTGTCGCCCAGGCTGGAGTGTAATGGCACAATCTCGGCCCACTGCAACCTCCGCCTCCCGGGTTCAAGCAATTCTCCTGTCTCAGCTTCCCGAGTAGCTGGGACTACAGGTGCCCACCACTGCACCCAGCTAATTTTTGTATTTTTGGTAGAGATGAGGTTTCACCATCTTAGCTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGACTCGGCCTCCCACAGTGCTGGTATTACAGGTGTGAGCCACTGCTCCCGGCCTTGTACTTGATATTTAACAAGCCAGTGTGCTCTGTCAGTATTGCAACATCTTGTATGAACTTGAACGGGTTCTAGTCATCCATGTTTGTGAATTGAAGGATAGACGTATATTTTTTATATTCCCCAAGCTTTTTCCCCCTCAATGTATCCAATTCCTTAGTTAACTTTTATAGACAATGCTGCTTTTTAAACGCAAGATTTTCATTTATAAAAATCTGCAGAAATATAATAAAGAAATGAAGAAATATCCTCTTAAATACTCCTATCCTAAAATAGACACTGTTAGGCTTCTGGTATGAATTCTTCCAATATTTTCTCCGCTTTTCCTCCTATGCAATTAATATTTTTATGATGTATATACAATTTTAACAATAAAGTTGAATGGGTAAAAGACTAGACAGTTCTACATTATTTGCCATACCTTTCACTTTGTATAGACTTTCAACATTTGAGTGAAAGTGGGCAGATACATATTTTTTACTAAAAGGAAACCACTCACTATTCAGGTCACACAAAAGCATAATCACATACACACACACACACCCCCCACACACACACCCCATTGTTAAGCTAGGTCAACAGTAAATGAATGAATGAATGAATGAATGAATGAATGAACAAATGGACAAGCAAACAGCAGAATTGAATGTCCTTCATCGCCAGGCACCAGAGAGGATGGCAAGCCCCTGGACTTAGGGTTGGGTGCACCTTCAGAGCTGGGTCTGGAGAGAACAGGGCGGGGCTGTGACCTTGCCCCTTAAGTGCTCATCCTGGCTACGTTGAAGTCTGGACATATCACAAAGTCCACACAACTTTGGGGAAGTTGTGGGAAGAACTGGGAATCCCTGAGGACAGTGATCACAGTGATTGAAACTCTTACAGGCAAGCCTGGGTGGTGCAGGGCACAGATTACAGTTCATTGCTCCATACTGTCCTGCCTCTGGGTGTTTCACAGCAAGGAGGTTGCCACTCACCACGGCTTCCTGTGACCTTCCAGTTCCCTTCTGCTTTTAGTTCTTTATTTACTCTGAACTTTCTCCTCTTGTTGCTGGGTGCACATCAAGTGAAATACCCAAATGTGGGCTGGGCAGGAAGGTACCATGCAGTGTGCAATCCACTCGCTGTTGTAATACTTCTGAGAGAGTGTTATCAGACAATTTCCCTTTTTAATGTCCTCCCACCCCTCCACATCTACCCCTGCTGTCAGAAGGCAAAGCCACAGAAGAGCTGGAAATGGGTTCTGTGGTACCAACATCCTCACCCACACCCTTTCCCCCATAAGTCCTTGCAGTTTATAGGCTTCTTGAGTTGTGTCCTCTCCAGCCCCACATACACACTTACTACAGAAATACTTTTCAACTAGAAGAAAAGAACCAGATCTTTGGACAAGTTGATCAGATTGAAAGGAATGTAGCTAGAGAGGGGAAGGAATGAAGGGAAGAGAAAGGCGTAGAAAGTGTTCTTGAAACCTCATGCTGTTTAAGTCAGTGGCTGAAAAATGACCCTAGGAGCAAGGACTTCATGTCTAAAACACCAAAAGCAATGGCAATAAAAGCCAAAATTGACAAATGGGATCTAATTAAACTAAAGAGCTTCTGCACAGCAAAAGAAACTACCATCAGAGTGAACAGGCAACCTACAGAATGGGAGAACATTTTTGCAATCTACTCATCTGACAAAGGGCTAATATCCAGAATCTACAATGAACTCAAACAAATTTACAAGAAAAAAACAAACAACCCCATCAAAAAGTGGGCAAAGGATATGAACAGACACTTCTCAAAAGAAGACATTTATGCAGCCAAAAGACACATGAAAAAATGCTCATCATCACTGGCCATCAGAGAAATGCAAATCAAAACCACAATGAGATACCATCTCACACCAGTTAGAATGGCGATCATTAAAAAGTCAGGAAACAACAGGTGCTGGAGAGGATGTGGAGAAATAGGAACACTTTTACACTGTTGGTGGGACTGTAAACTAGTTCAACCATGGTGGAAGTCAGTGTGGCAATTCCTCAGGGATCTGGAACTAGAAATGCCATTTGACCTAGCCATCCCATGACTGGGTATATACCCAAAGGATTATAAATCATGTTGCTACCAAGACACATGCACAGGTATGTTTATTGCGGCACTATTCAAAATAGCAAAGACTTGGAACCAACCCAAATGTCCAACAATGATGGACTGGATTAAGAAAATGTGGCACATATGCAAGGATTTTCCTTTTTCCCATTTCGAAGATAAAGCAACTGAGGCTCAGAAAGGTTATTGTCTAGTGATAGATTGCTAGCAAGTAACAGAGCCAAAATTTGGGCGCAGATTCCACCACTTGGTTGGGAAAGGGGGAAGAAAGTATTTTCCTCCATTTCTGTGTTTCCAATCATTTGTCATTGTTTTCTGGTAAGGTCATTGGGGTGTTTCTGAAGAAGGTATCAAGGGAGAAACCAGTTCCACCCCTGTCTAGAAGCAACAAAAATGAGTTGCACCACTATCCTCCCAAACAGAGCACCAGCTTCCTTTAAAAATCACCTCTAAAGCTGTTTGTGATTGAGCACTTCAGGATGTCAATCAACTGTAAGCTGCTGCTATTTTACACCTCTACAATCTCTAACTGGTGATGAAGCATCATGAAATTCAAACAATCACTTTTAGCCAAATACCATCGTTGTATATTAATCACACACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGGGAGAAAGAGAGAGAGAGTTACAGAGTTCAGGTTGCTGAATTATAAAATGATCTCTTCTTTTCTCCTCTGCCATGCCCATGATAG
Seq C2 exon
CCATTCCCTGCACACCTTTGCTAAGCCCTCAGAATGGAACAATGACCTGTGTTCAACCTCTTGGAAGTTCCAGTTATAAATCCACATGTCAATTCATCTGTGACGAGGGATATTCTTTGTCTGGACCAGAAAGATTGGATTGTACTCGATCGGGACGCTGGACAGACTCCCCACCAATGTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174175:ENST00000263686:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=92.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development