GgaINT0038541 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:3734856-3735373:+
Coord C1 exon
chr8:3734856-3735041
Coord A exon
chr8:3735042-3735175
Coord C2 exon
chr8:3735176-3735373
Length
134 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
3' ss Seq
TATGCTGCTTTTTCCTGTAGCCG
3' ss Score
9.09
Exon sequences
Seq C1 exon
CTGTCACCTGCCCGGTGCTCAGTGCTCCGAAGCATGGAGAGCTGAACTGCTCCCACCTCCATGGGAACTTCACCTTCAACTCCACATGTGACTTCTCCTGCCAGCCAGGGTTTGAGCTCACGGGGCCACAGAGCCGTGAGTGCACAGCTGTGGGGACCTGGAGCAAGGACACTCCACGATGCAAAG
Seq A exon
GTAGAGCTGCTGCTAGAGTTTGGGGTGTCACTGCTACGGGGATGGCATTGGGATGTTCTTCATCCTCTTGGTCCCAACATTTCAACCCCACAGTAACCGGGCTCCTGCTTAAGGTATGCTGCTTTTTCCTGTAG
Seq C2 exon
CCGTCACCTGCCCGGTGCTCAGCGCTCCAGAGCATGGAGAGCTGAACTGCTCCCACCTCCATGAGAACTTCACCTTCGGCTCCACGTGTGACTTCTCCTGCCAGCCAGGCTTTGAGCTCTTGGGGTCACAGAGTCGTGAATGCACGGCCACCAGGACTTGGACCAGGGAGAGCCCACAGTGCAAAGGTAGAGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643:ENSGALT00000004163:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
PF0008415=Sushi=WD(100=86.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACATGTGACTTCTCCTGCC
R:
ATTCACGACTCTGTGACCCCA
Band lengths:
246-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]