RnoINT0132708 @ rn6
Intron Retention
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82360104-82361495:+
Coord C1 exon
chr13:82360104-82360292
Coord A exon
chr13:82360293-82361318
Coord C2 exon
chr13:82361319-82361495
Length
1026 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TATCAACACGTCCTTTGCAGGGG
3' ss Score
7.56
Exon sequences
Seq C1 exon
CTTCCCAGTGTGAAGCCTTATCTGCACCACAGCGAGGCCACATGAAATGTCTTCCCAGTGCCTCTGCACCCTTCCAAAGTGGGTCCAGTTGTAAGTTCTCCTGTGACGAAGGATTTGAATTGAAGGGATCAAGAAGGCTTCAGTGTGGTCCAAGAGGGGAGTGGGACAGCGAAAAGCCCACATGTGCAG
Seq A exon
GTACATTCTCTTTAAAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTCTCTCTCTCGTGTATATGAGTATACTGCAGCTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTATGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAATCACTGAGCCATCTCTCCAGCGTCTGTCTCTCTTTTATTCTGTCTCTGTCTCTGTCTTTCTCTCTCTATGTGTGTGTGTTTTATTCTGTCTCTGTCTCTCTGTCTCTGTCTCTGTCTCTCTCTGTGTATATGTGTGTGTCTTATTCTGTCTCTGTCTCTCTGTCTCTGTCTGTCTCTCTCTGTGTCTTATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGGTGTACTCCAAGACCCGTATGTGGAGGCCAGAGAACAATTTGCGGGAGTCGATTTTCATGTGGATCCCATCATATGGGTCCCAAGAATGAAATTCAAGTTGCTAAGATTGGCAGCGAGTGCCTTTACCCCCTGAGCCATCTCTCTGGCCCCTGCAGACATACTTTGGATTTTACTGTAAGATAGAAGCTACTGAACATCTTCGTGGCTTGGCTATGGGAGAGACCTGCTACAGCCCAATGCTTATACCTCAGGATGGCTTCTCTCTTCCAGCTGTGAGATGTGATGCTGTCCCTTGGCCCCAGAATGGTTTCGCGGCGTGTGCTCATGCTAATACTGGAGCATTCACTTACAAGTCCTCATGCGCCTTTCAATGCAACGAGGGCTTTAAATTGCATGGATCAGCTCAACTTGAGTGCACATCCCAGGGGACGTGGACCCAGGAAGTTCCCTCCTGCCAAAGTAACACTGGGTTCAGGCTTTCAAGACACACATTGCCTTAGTGGGTTTGTGGTATGGTTTTCTTAACTTCTACTATCAACACGTCCTTTGCAG
Seq C2 exon
GGGTACAGTGTTCAAGCCTTGACCTTCCAGGAAAGATGAACATGAGTTGCAGTGGGCCAGCAGTTTTTGGCACAGTATGTGAATTTACATGTCCTGAGGGTTGGACACTCAACGGATCTTCAATCCTGACATGTGGTGCCACAGGACGCTGGTCTGCGATGCTGCCTACTTGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723:ENSRNOT00000030677:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.2)
A:
NA
C2:
PF0008415=Sushi=WD(100=88.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTTATCTGCACCACAGC
R:
TTCACAAGTAGGCAGCATCGC
Band lengths:
353-1379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]