GgaINT0038644 @ galGal4
Intron Retention
Gene
ENSGALG00000003399 | SELE
Description
selectin E [Source:HGNC Symbol;Acc:HGNC:10718]
Coordinates
chr8:5101115-5102089:+
Coord C1 exon
chr8:5101115-5101300
Coord A exon
chr8:5101301-5101981
Coord C2 exon
chr8:5101982-5102089
Length
681 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTC
5' ss Score
6.8
3' ss Seq
AGCTGTTTTTCTTCTTTCAGCTT
3' ss Score
9.49
Exon sequences
Seq C1 exon
TTGTACAGTGTGAACCGCTGAAATCTCCTGAGAAAGGCTCTATGGATTGCATACATGGTGCTGGGAACTTCACATATAACACGGCCTGCCACTTCAGCTGCCTAGAAGGATGGAATCTCAATGGATCTCGTGTTCTTGAGTGCAGTCATTCAGGAAACTGGAGTGCCAGTCTGCCCACATGTGAAG
Seq A exon
GTATTCTATCTGTGACTAGCCAGAAAAAGATGTCACTGGGTTCCTGGCCAAAGTAGGAGGTATGGAAGGGTGGAGGGGATAACAGCAAGCAGTGAGTTAGAACTTGTAGTGCAGCACACAAAAGAAGAAACCTAATGAAATCTCTGAATATGATCCTTGAAAATAAGGAGGAACATTCCTGATGGGTCTGGATGGGAAGCCTTGATTTCTTATCAAAACCAAAAGCCTCAACCTGACTTTAGGCATTTTTTTGTGTGTTCTTAACTACAATATTTCTCATGCTGAACTATTTCCATGTTAATAAAGAGCTTTTATAGAGAAGTACGACATTATAGAAAAATTTGCATTAATCAGTCTGCTTCTCGGTGGAAGAAGTTTGTAGATTTATAAATCAGATGTGAGAGCTTCTTGAGCGAGCGCCTCACAGAGCTTTTCTGTGAAGGGCTGTAAATTTACAGGGCAAAAGTCTCCCTTTCCATCCAAGCCAGTAAGAGCTCTTTCCCTCTCCCCAGTAAGAATATGATTGGCTCACCTGATGTGCTGTAGGTCCCAAGAGCTCAACCCCACACTATTTGGGCAGAATTCAGATCCTTGAATAATTTTATTGATTTCGGTCGGGCTCTCAAAGAGGAGGAAACCACATGCCCCTTGATCTCACTGTAGCTGTTTTTCTTCTTTCAG
Seq C2 exon
CTTCTCAACAAGTTGCCTATGTCACTGTAGGCATAGCAGCCACCACTACCTCTCTGCTTGCCACAGCATCATTCCTCTTTTGGCTTGCAAAACGGTTACGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003399:ENSGALT00000005376:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGAACCGCTGAAATCTCC
R:
TTTCCCCGTAACCGTTTTGCA
Band lengths:
286-967
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]