RnoINT0132709 @ rn6
Intron Retention
Gene
ENSRNOG00000002723 | Sele
Description
selectin E [Source:RGD Symbol;Acc:3654]
Coordinates
chr13:82361319-82362209:+
Coord C1 exon
chr13:82361319-82361495
Coord A exon
chr13:82361496-82362098
Coord C2 exon
chr13:82362099-82362209
Length
603 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CTCCCAATTTGTTTCCTCAGCCC
3' ss Score
7.63
Exon sequences
Seq C1 exon
GGGTACAGTGTTCAAGCCTTGACCTTCCAGGAAAGATGAACATGAGTTGCAGTGGGCCAGCAGTTTTTGGCACAGTATGTGAATTTACATGTCCTGAGGGTTGGACACTCAACGGATCTTCAATCCTGACATGTGGTGCCACAGGACGCTGGTCTGCGATGCTGCCTACTTGTGAAG
Seq A exon
GTAATGCATTGATGGATGGTGGTTGCCTCGGGGAATTATGCTGCTAAGGAAGCTAAATGCCCATTATGTCCAAATCAGAATGGTAGGTTATAGATAGAGATGGATAGAAAGACAACAGAAAATGATGTCACCGGATCAGGTAGAATGTTCTGTCCTCTGACACCCTACTTTCCTCTCCAATACTCACCACTGACCCCCACCGTTATCATGATTCACTTCACAGTCCTTCCCTGGTCTCCCTTTCTCTCCTGTTATACCTCTTTCTGTTCCCTCATTGTGGGATTCAGGTCATTGGAAAGGGGAGATCTAGAGACTCAAGGAGGAGTAGGAAATAAGTGTGTGAGAGAGAGAAAGGAAGGATAGTTCAGCGTTAACCAAGGTGTGGTGACGTAGTGTCAAAGTGCTTTACAAGACTGTGCTCTAACTGGGAACACGGGGACACAGCCTCAATGGCGGTTTGAGGGGAATTGGTTAAATCTTCAATGTCGTCTCCGTTTCTTCTGCTGCTGTAATGAATATACAGAGAAAAGGCCAGACGGCAGGGACGAAAGACTTGAAAGCCAACCATTGCTTACACTGCCTCCTCCCAATTTGTTTCCTCAG
Seq C2 exon
CCCCAGCCAACCCTCCCCGTCCCTTGGTAGTGGCACTTTCTGTGGCAGCAACCTCACTTCTGACATTGTCCTCATTGATCTACGTGTTGAAGAGATTCTTTTGGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002723:ENSRNOT00000030677:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTACAGTGTTCAAGCCTTGA
R:
TTCTTCCAAAAGAATCTCTTCAACAC
Band lengths:
286-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]