GgaINT0039019 @ galGal3
Intron Retention
Gene
ENSGALG00000002803 | MTA1
Description
NA
Coordinates
chr8:4080502-4084779:-
Coord C1 exon
chr8:4084753-4084779
Coord A exon
chr8:4080634-4084752
Coord C2 exon
chr8:4080502-4080633
Length
4119 bp
Sequences
Splice sites
5' ss Seq
GACGTTAGT
5' ss Score
0.13
3' ss Seq
GGTCGTTTTGTCTCTCTGTGACT
3' ss Score
-8.01
Exon sequences
Seq C1 exon
CATTGGTCCCGGTTGTGAAACCACGAC
Seq A exon
GTTAGTGGTTGGAGCCGAGTGGCACGGGCAGCACTTGGCAGCCTTATGGTCAGCTTTCATCAGCTGGTGTTTGGGTGCCAGGCATGCACGGCAGCGTGCTTGTCAAAGTGCTGAATCTTCTAAAAATAAACATCTTTCGGTGATGAGGTGTCATTACTCAATCAGTCCGTGAGCTGCGTGAGAGCCGTGTGCCCAAACAGTTAGGGGTCCATTGAGTATTTTTAGATAACACCAGCCAGCGTAAATGCAGTTTGATGACAGCTTTACTGGTGAGTTCTTGGCCATTTCACACCCTCTACCCCCACTTTCTCCCTGATCCACACATGCAGTTTTAAAACGAGCCAAGTTCATTAATCTGCGCAAGGACGCTTTTGGGCCTGCTGTTAAAAGGAGGAAACTGATTTCCTCTTCCAACACTGGTGTGGTGGGAAAGGAAAGTGTCAAAAACAGGGCCTGTTTGCTCTGTCCCTTCCCGCAGTGTTGGCTGTGGTTGCAGCAGGTGTTCACAGTAAGTCTTGGGAGGGGTCATGAGATGTTTGCTCCGTACTGTGGTCAGCTTCTCCTGAACTGTCAAGGTGTGAGGAGTTCCACTTGTTGAAAACTCCACCACATTGTTGTAGCTGTGAGTCAATGTTTGGGTTTTGGTAGAGAGAGAAGAATCGATGTTCCGAGGCTTAGTATGGACCATTAGAAATGGTCCTGGGAAAAGGAATCTGTTGTCACAACATTGGTTTCCTCCAACACAGAAGAATCTTCTGTCGACTTGTAGAGCTGCTGAATGTAGAGTTGTAGAACATCTTCCAGAGCTGCTTAGTTGAAGCTTCCTTCCTGCTGAAGGAACCCTGACAGGTCATGACTTCATTGAGTTTCCCAATGTTTTGACCCCTTTTTCTTCCTTTTTACCTTTACATTTCAAACGTAGTGATACCATGCTAACTAATTAGAATCATAGAATCATCAAGGCTGGAAAAGATTTCCAAGATCATCTAGCCCAACCATCCACCTATCACCAACGTTTCCCACTAAACCACGTCCCTCAGTACAGCATCTAGATGTCTCTTGAACGGCTCCAGCCACAACCTCCATTCTTCTATTACTACAGACTTGCCTGTCTTCCAAGCTGGGCATCCCAGTGAGCGCTCTGCACCTTATTTCTGTGTCATTTGCCCTTGTGCTTTTCTGAGTTCTGCCATGCAGCAACTTGCACAAAGCCCAGAATGCAGAGCGAGAGCTCTGTGTTGTATCTCTGGTGTGGAGAGCCCAGTCAGATCTGTATCAGATTGCTATTCTTTCTAACGTCTAGCAAATATTGATGTTTAATTTCGCATCTCATATATCCGGTCGTTTTAAATTACAATTTCTGCCTCTTGGGCTTCTCCTGCCAACTCAGTGTGCTCTTTCTAATTATTTTCCCCAATATATGCTGGCTTTCACTTGGGTCTTGCTGTTTGTGTCCAATCTGCCTGTCTCTTGCCTCCACTGTGTCACTGTCAAGCTTTTCTTAATGTGCTATTAATGATTCTGTAGTGAAATATCAAATAATGCTTAATCTACTGCAGTCCTTGCAGCATTCCGCTGGCTACTTTTGCGTAGCTGAAATATTACTGCTTATATTAAGGCTAAATGTTTAGTTTTAAATCCGCATGAGTGCATCTATCAAGCAGAGAGATTAATTTTGAAGCAAAGCTTTACGAGATCATTGAAATCCCAATATACTGCACCTACTGTGTTCTCATCACTTGCTCCACAGCACTGCCGTAAATGTGGGCAAGTGCTTCTGAAAGGAGTTTATTATTGTTATTACTATTTATTTCTAAGGCTATTGTTCTTATCTTTCAGGGGCTGCCATTCTGGAGCCTAAAGGCTGCTTTGCTGAGAACGTGAGCTGTAGGAGGTTGAGGTGCAGATGTGTTGCACTTGTCCTGGAGCCTTAGGCTGCGTTAGCCCTGTTTTGGTTTATAGCCGACTTAAACCTTTGCAGTACGTGAGGTGATGAGGTGGTATCAGTTACTGTTTGGATCAAAGCCACTTTTTGCATGACTCCAGTTCTGCTTTCCTGGTGCTTTTCTTTGCTTCAGAACACGTTTGCCACAATGCATTGTGCCGTCTCCTTTGGAAGGCTGCGCATAGCAGAGCTGGCACAAGAAGAAAACTTGTGTGTCCCACCTTCCTTGTTTTATTACAATCACAAGGCATATAAATAAAACAGGAGTTGGAAGACAAGGGGTGTACTTCCAGAGATGAGCTTGGTTTTGCTTTGTGGTTTCGTTTTCTTCATAGATAAGACTAGCATGTAGTCCTCAATGTATTTTTTAATGTAATTTTTGAAAGCTTTCAGCTACTAAATATACTGAAGATATTAAGTGTATTAAAGTATTAAGCTGCTCCTTAGTGCTTTTCCTGCATTACTCTGTGCATACTCTGATTCTCCAAAACCTCTCCTAAGTGCAGGAGGCATTAATGCCTTTTCCATCGGTTTTTGAGCAAGCAAGCTGGTAACTTGCTGACTTGTTTGTGCATTGCTGCTGGTATATTTATAGTGTAAGGCAGCAGCCACAGTATTAATTTTCAACAAAAACAGAATCCACTTCAGTAAATAAATGGCAGAACCATGAAACTGGGGCACAAATGTAGATTCTGTGTTCCAGTGTGTAGAAAAATACTAAGCTGTAACACGTGCTGCTGTATGCAGAACAGCTCGTGCAGTTATAATAGCTGCTGCGCGTTGCAGTGGGGTTTAATTACGCTGTTTTTTCCCTTCCTTGCTGGAACAGATTACCTGAGGGGCTTATAAACCACAGGTCTCTGTTCCAGGGCGGTAAAACAGCGATAAATCATGAGGAATCTGAAAGGTATATCGTTGGTTTTTGTCACCCCCTTTGGCATAACGGTGGGCTATTTAAATACAACTTTAATGTTTTGTAAAATGGCGTTCTCTCTCCTTTCAGTTTGCTCTCTTTTGGGCTGGCGATGAGGATTAGAGGTAACTAATCTTCAGAGTGTATGAATCACAACTGCTCCTGTATGCATTTCTGACTAGAAATGTTTCTTGGCAACAAGTGTTGAATTAAGCTGCAGGCGTAGGTCTGCTCTTTGAGAGCACAGAGGAAGGAAAGTCGCAGCTCTGCTGTTGGGGTATGAGACGTTACAGCTCGTCCTGCTCGAGTCTGGGAAGCTTTGCTGTGCTTTTGGACAACGCAGTCACTGCCTTCATTTCGTAGGGAAGGAGGAGGTCTGGGGTTTTCTTTCCTGTCCTTCATCATGAAGCTTTCGGTTATCTGTAGCTTTGTGTCGTGTGATTGACAGGATGCTTGCTAATGAACGCAAAGCATGACAATAATTTACTTCTAACAAGAACAATGCCTAGAGATGTTTTGGATCGGTTGTGTATCCGTACGGGTGTGATTTCATGTATTTACTTTGGCATTCATTTAAAACTGGCTGGATGGAGATAGCGTGGCTGGAAGCCGGCGGTGGTGGATCCTGGCTCCAGGCTAACACGGGCTTTGTGTGGCAGCAGTGTGCGAGCTGCAGCAGGGGAGGGCTGCTCACAAGGCTGGCCTTGGGCACTTGGTTACGTTCCAGTTCATCTTGTGACTGTGATCTATTGCCTGCGGTCAGGGTGAAGAGAGTGAAATCCGCTCAACAGCTAAACTGGTCTTTGCAGTAGGCATTTCTTTCAGAAGCCGTTGAAGGCAGGACGGGGCAGTGTGCGACTGTGATACGCTGGAAGAGGAGCAGGGTGTATGATAGCTGACACCTGGCCTGCAGACTTGGCTTTCCCTGCCTCATTCATCATGCGTCAGCTCCTTCCCAATGCAGCTGGTGCTGCAGGGACGGCTGGTCCCTTGTTGGTCCCTTGTTCTTCTGCAACAGATTCCTGACCACAGCTTGGTGGGCCAGCACAAGCATTGACCTGGGTGGTGATAAGCACTGTTCTTCACAGGCATGACTTAAAGCTTCTGTATTAGTTATCTCATTATTTCCTTAGTTGAAATGTGAGGGTTCAAAGTTAGTTTTCACCTTGTGTCCGTTTATTATTTAGCAGAGGTTTTGGAGCTGGTTGGCCTGGAGTCCATCCTTGCGCCGTGTTAGTAATGGTCGTTTTGTCTCTCTGTG
Seq C2 exon
ACTAGGAGAAATGGAAGAAGAGATGGAAAACCCAGAAATGGTCGACTTGCCAGAGAAACAGAAGCATCAGTTACGACATCGTGAGTTATTTCTCTCGCGACAGCTGGAATCCCTGCCAGCCACACACATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803:ENSGALT00000004434:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.692
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(5.6=100)
A:
NA
C2:
PF0142613=BAH=FE(29.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]