GgaINT0039206 @ galGal4
Intron Retention
Gene
ENSGALG00000005069 | heme
Description
Prostaglandin G/H synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:P27607]
Coordinates
chr8:9815404-9815988:+
Coord C1 exon
chr8:9815404-9815690
Coord A exon
chr8:9815691-9815840
Coord C2 exon
chr8:9815841-9815988
Length
150 bp
Sequences
Splice sites
5' ss Seq
AGGGTAGGT
5' ss Score
8.1
3' ss Seq
CTTTTGTTTCTACTGATTAGGTT
3' ss Score
7.06
Exon sequences
Seq C1 exon
GAGAAACGATCAAGATAGTTATTGAAGATTATGTGCAGCACTTAAGTGGCTACCATTTCAAATTGAAGTTTGACCCTGAGCTTCTGTTCAACCAGCGTTTTCAATACCAGAACCGAATCGCAGCTGAATTCAATACTCTGTACCACTGGCACCCCCTTCTGCCTGACACTTTTCAGATACATAACCAGGAGTACACATTCCAGCAGTTCCTCTACAACAACTCCATAATGCTGGAACATGGCCTTTCCCATATGGTGAAATCTTTTTCCAAGCAAAGTGCTGGTAGG
Seq A exon
GTAGGTATTTTCTCAAGTTACTAGTAAGCAGAGGCATCAACTTGGGCGTTGACCAGCAGTGCAATAAATCTAACCAGAACTAATAATATTAAGATACAACTTTCTCAACTGTTATCCAGAGATCTCACTACTTTTGTTTCTACTGATTAG
Seq C2 exon
GTTGCTGGTGGGAAAAATGTTCCAGCTGCAGTACAGAAAGTAGCAAAGGCTTCAATTGACCAAAGCAGACAAATGAGATACCAGTCTTTGAATGAGTACAGGAAACGCTTCATGTTGAAACCATTCAAATCATTTGAAGAACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005069:ENSGALT00000044290:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309810=An_peroxidase=FE(26.1=100)
A:
NA
C2:
PF0309810=An_peroxidase=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTTCTGTTCAACCAGCG
R:
TTCTGTACTGCAGCTGGAACA
Band lengths:
249-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]