GgaINT0039806 @ galGal3
Intron Retention
Gene
ENSGALG00000004775 | GLT25D2
Description
NA
Coordinates
chr8:8058601-8059523:-
Coord C1 exon
chr8:8059413-8059523
Coord A exon
chr8:8058719-8059412
Coord C2 exon
chr8:8058601-8058718
Length
694 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TTGACTGCTTTCTTTGCTAGGTC
3' ss Score
10.26
Exon sequences
Seq C1 exon
GGTGGCCACTGACCACAACGCTGATAACACCACTGCAATCCTTAGGGAGTGGCTGAAGAATGTGCAGAACCTCTACCATGATGTGGAGTGGAGGCCGATGGAAGACCCGCA
Seq A exon
GTGAGTACTGCAGCAGGGGCTGGCTCTTGAAAGTATAGCCCACGTTCCCTAGGTGCTTTCCTGCTCTCCAGCCAGGGAATGCATTCAATCAACACACATGTGGTTTTTCTTTGTGGGGTCTGTCCCATTGGAGCTGTTGTGGTGGAGCATGTAAGACTTCAGTGAAGCAACTACTGCAGAACTGGGGAGGCGTTTTCCATCCAGTTACTCAGCATCTGCAGCCGCTCTCCTTTGCATGGTGAACAAATCACACCAAAAGCTGCAGGAGTTGCACACTGCTCTTCTTTATGTGCAAGGGAGTAGAGAAATCACAGCTCTTTCCCATTGCTTCCACCAAAGCTCTGTCCCTGCTGTCAGCTACTCAGCAAGTTCCAAGCCAGAGAAAGGCATACCTTGCACAGGGATCTGTCCCAGAATTTCCCTCAATCCCTGTTACAGAGGTTTTACCTTTGGACCCGATGCTGCTGATGCCCTGGGCCTGACGGGATCCTCCTGTTGTGCCTGTGGCTCCTTGGTTGTCAGGAAGTGCTGCATGCTCTACACGTGCCAGCATGAAATTTGGAACCATTTTCCCTTGGAAGCACTCTTCCACTCTGTTTTCCTCTCCCGAGTTGCCTGAGGTGCCTCTGATGCTGTTTTCTTTGCAAAGAAGGCAGCAAGAGTGCTGTGCTTTTTTGACTGCTTTCTTTGCTAG
Seq C2 exon
GTCCTACCCAGAAGAAATGGGACCGAAGCATTGGCCGAGCTCCCGGTTCACCCACGTGATGAAGCTGCGGCAGGCTGCCCTGCGTGCTGCACGGGAGAAGTGGTCAGACTACGTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004775:ENSGALT00000039353:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(30.6=100),PF0106314=Aminotran_4=FE(28.7=100)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=FE(32.2=100),PF0106314=Aminotran_4=FE(30.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCCACTGACCACAAC
R:
TAGTCTGACCACTTCTCCCGT
Band lengths:
222-916
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]