HsaINT0069713 @ hg19
Intron Retention
Gene
ENSG00000198756 | GLT25D2
Description
glycosyltransferase 25 domain containing 2 [Source:HGNC Symbol;Acc:16790]
Coordinates
chr1:183944231-183947654:-
Coord C1 exon
chr1:183947544-183947654
Coord A exon
chr1:183944349-183947543
Coord C2 exon
chr1:183944231-183944348
Length
3195 bp
Sequences
Splice sites
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
3' ss Seq
AGCTATTATTATTATTTTAGGTC
3' ss Score
7.36
Exon sequences
Seq C1 exon
GGCAGCCACTGATCACAATGTGGATAATACAACAGAAATATTCAGGGAGTGGTTGAAAAATGTACAGAGACTCTATCACTATGTGGAGTGGAGGCCTATGGATGAACCAGA
Seq A exon
GTGAGTAGCAAGTGCGAAATTTGTAAACTCATTATTTACCCTTCCTCTTTAACTAGCTCTTTAGGGCTTCCAGGTTTGGAGGTACATGTGACTTTTCATTGTCTTTCATTTCTGTAGCTATGTGAGTTCTGAATATCTGCCATTTCTCCCTTTTAGAGATCTTCACAGTACTCTCTTGCTGTTTACTCCCACAGCTGCCAGCCAAGTTCAGATTTTCATTACTTCATAAATAAATTGCCATGACAGTTTATATTTTTAAATATTGATATTATTTATTCATATTTTAAACAAACTTTTATATTTGGAGGATCATATTGAAAATGTGTATACTTTCTACATAGAGCTTGCTTTTTTCAACTTTTATCTTGATAATCATTCTATAGCAATAGTTAAGGAGCTAATTTTCATTTTTTTTACTGCATAATCACTGTTGTATGTGCATTTACCATAATTATTTAATTGATCCCCTACTGATGCTCATTTAGGTAATTTCCTATCTTAACCATAGAAATTCCTTCTTTCTTTCTTTTCCTTCTTTTCTTTCTTTTCTTTTCTTCGCTTCTCTTCTCTTCTTTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTTTCCTTCTTTCTTTCAAGACAGGGTCTCACTCTGTCACCCCAGCTGGAGTACAGTGGCATGACCATAGCTCCACTGTAACCTCGTACTCCTGGGTTCAGGCAATACTCCTCACTCAACCTCCTGAGTAGCTAAGACCACAGCCATGCACCACTATGCCTGGCTAATTTTATTTTTATTTTTTGTAGAGACATGATCTCACCATGTTGTCCAGGCTGGTCTTGAACTCCTGGCCTCAAGCGATCCTCCCACCTTGGCCTTCCAAAGTGCTGGGATTACAGGTGTGAGCCTTTGTGCCTGGTTACCATAACAATTTCTTTCTTTTTTTTTTTTTTTGAGACAGAGTCTTGCTATGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGTGTGTGCCACCACACCCAGCTATTTTTTTGTATTTTGAGTAGAGAGGGGATTTCACTATGTTAGCCAGGATGGTCTCGATCTCCTGACCCTGTGATCTGCCCGCCTTGACCTCCCAAAGTGCTGAGATTACAGGTGTGAGCCACCGTGCCCGGCCACCATAGCAATTTATTAATTGCTTCTATCTCCAAGTCATCCTACATACCATACAGTCAAATCAATCTACCTCAAATACAAATGAAATGGTTTCATTTCTTTATTAAAAATACTTCACTTACTCTTTAGGACCTGAACAAAGTTCAAACACCTAAGACTTATATTTTTAAAATTCCATGAATTTAGCACCAAAAGAAAATGTGCTTTATCCAGAACGTTTCTTTTATTTCCAAACCCCACACTGTTGCTTGTGCAGGTCCTGGAAGACCCTTTCCTTCTTTATAACTAATTCTTATCCTAAATCATGCCTACTATAGAAACCTATTCTTAATCACTCAGTTATAAATATCTACCTTTGTCTCAACAATTGTATTGCTTATATTCTATGTCATCCTTTTTGGCACAATGATATACGCAACCAACATTTTCCCCCTATGCAATTAATGTATTTTTTTTCTAAATAAGTTGTAAGTTCTTTGGCAGGGGCTAGAATATATAAACACTTTATATTCCCCCTCTCCCCTCAGAGCCATGTTCTTGGCAGGCACTAAATTAATACTGGTTGGATGAACAAATAAGAACAAGAATAAATGTATTTAAAACTTACTATTATAAATGTTCCCAAAGCTACTACAGTTTTACTTTAAGGAACTGTAGAAATAGAATGAAGGAGTTGCCTGAATTTCTTCCCCAGAGAAGTCATTTATTGAAAGCCAAATTTGTATTATAGTAATAATAAATGCCATTCCAGAACAAGTTTCTGTTCTTCTAGTCTTTCTATATGTAAGAATTATTATAAATATTTATATTATAAAGAAATATATATAAATATGATATAATATATACATATGTGTTTCTCAAATCCAAGCCCATGGACTGTATATCAAGCAAAATTTAACAGTGAAGTCTGAACACCGTAAAAGATTGTAAACACTCCTTTAGAGTGCCTTATAATGGAGTTTGGCCTAACAAAAATGGCACAGAAATACTTTGTGTCCCTTCTTTGCACCTTGGTAATGTTCTCTGCAGCCAGGTTTTGACTAAATATATTATATGCCAAGGTCAGTGTGAAAAAATATTAGAACAGGCATTTTTGGGGGGAATATATTTAGAAAAATGAGAATTCCACTGATTTTCATTGAAACAATAACTGGGGAAGATATTCCAGAGAATTCCTGTGCTGTACATAGTTTTATTAACCTTATTTGTTTAGTTACAGTCTCATTGTTTTTGCAGTTTTTCACTCACTAAAACAAATGTACTGCCAGTGCAGCTATGAGATCTTGAAGTGGTGGCCAGTTTTGGGTTACTGCAACAGTATCAATGTCCGTGCCAGCTGGGTGCCTTCAGAAGGGTTTTGGAGCGTGCTCCAACCCACTTGCCTATGTGGCCATGAAGGAGTCTTGGCCTGGCTGTTTTGTGAATCTTGATAGAGATCCCACGACCTCACTTTACCTAAGATAGATCAATGTGTTAGGCTGTGTGGAATCATTTGTGGAGACTCCAACAAGTAGATTAAACCTTTGATTTTCCTGGGAAACTCATGTTTTACACTGCATACTCTCCAAATCTATTCGATGTCGGGATGTATAAAAATTGTCTAGGAACATGAGCTTTTTGCTTGGATTCAAATCTTGATTGTGCCCCATTGTGTAACATTGGACGAATGACTTAACTGCTCTACCCTGATATCCTCACCTGTGAAATGCAGAGAATAGCAGTACTCACCTCAAAGGGCTCTCATTAGAACCCACTGAAATATTTCATGTAAAGATTCTTGTATACAATGAGCAGTGAGTTACTTGACTTCTCATTGCTCCGGTTTCCTCATCTGTAATATGGGGATGATGATAACAATAATAATAGTATCTACTTCCTGGGATTGATAGAAGATTAAATGAATACATATAAACATTTAGGACAGAGCCTGGTACATGTAGGCACTCAATAATGATGAGCTATTATTATTATTTTAG
Seq C2 exon
GTCTTACCCTGATGAAATTGGACCAAAGCACTGGCCAACCTCCCGGTTTGCCCATGTGATGAAACTACGACAGGCAGCCCTTCGAACTGCGAGGGAAAAATGGTCAGACTACATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198756-GLT25D2:NM_015101:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF137041=Glyco_tranf_2_4=FE(30.6=100),PF0106314=Aminotran_4=PU(21.2=55.3)
A:
NA
C2:
PF137041=Glyco_tranf_2_4=FE(32.2=100),PF0106314=Aminotran_4=FE(39.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)