GgaINT0039828 @ galGal3
Intron Retention
Gene
ENSGALG00000004290 | ANGPTL1
Description
NA
Coordinates
chr8:6650522-6652660:+
Coord C1 exon
chr8:6650522-6650718
Coord A exon
chr8:6650719-6652389
Coord C2 exon
chr8:6652390-6652660
Length
1671 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
CCTTCTTATCTTCTGTACAGAAA
3' ss Score
8.63
Exon sequences
Seq C1 exon
AAGGTCCGTTCAAAGACTGCCAACACGCCAAAGACGCTGGGTATTCCAACAGTGGGATTTATATGATCAAAGCCGAAAACAGCAATGAACCAATGCAGCTATGGTGTGAGAACAGCTTAGACCCCGGAGGATGGGCAGTTATTCAGAAGAGAACAGATGGATCTGTCAACTTTTTCAGGAACTGGGACAGTTACAAG
Seq A exon
GTAATTTCTGGAATGCTGAAAAACAGCACCTTCATTTCGGTGTGACACTGACTACATTGTCTACTGCAGTCAAAAAGGTGTTACCATTCCCAATGCAAATCTTCATCCCAAATGTTTCCACTGAGGAGATGAAAACAGTCACTTAAGCTATGAAGGAAATCAACTGCACAGAAGCAGGAGGGGCTCTCCTCAGAGATGGATATTTTTCAGTAGGAATGCCCTATTTCACTGAATGCATTACTTAACTTTGTATTGACTCACAGTTTGAAACAGTCTGTCTGTAATGCACAACACAACATTTGCAAAGAGATGTTACTCTAGACAGCGACTGGGAAGTCATTAATTACAAAGACCTAACTGAGCACATGCTTTCCATTAACACACAAACTACAATAAGTACTGAAAAAGTTTGTCTCCTCTATGAATACACAGTTTTAGCCAATGAAATTATTCATTAAAGCATACCAATAGATTTGTAGAATCAGTGCCTCAACTTAATAATATTCTTAGTGATGAATTAGAATAAATCATTCTTACACCTTTAGAATTGCATTCGAAATCTCTGCAAGATGTAGGGCTTGTGAAGGGAAGTATGTTCTTATGTGATATTACTACTGTGATATTATGCATATTATGATATATTATGATATATTATGATATATTACGATATCAGGCAATATACCTGGGCCAAAAAAACAGACTGCTTTGGAATAATTACACCCTCAGCAGAAAATGTGAAAATCTGTTTGTATGTTTTTTTAAATAATCATGTTCTAACTTCATAGATGCAGGACAGCCCTCTCCTCTGACAGTGTGCTCATCTCAAATGGACCTCCAGTTGTGGTTTTCCTTATATTGAAGAGAAAACAGACATTTAACTCAACTGCACCAAAATTATCATCTATGCAAAGAAATGATAAAATTACTATGAGGATTTTCACTTTTTTTTTTTTTTTTGCACTACATTTGTAGAATTTAATCATTACTCTTTAGCAGTTATTCAAAATCTTTACTTCTGAGAATGGTGGGTGGGCTTTCCCCACAGCCCTCAAGATATCATAAGGCAGTTATAGCATCTTACAAAGTAGCCATAAACATCTTTAATATAATACTTTGGAAGTGTATTAAGAGTCTATAATTGGTGTTTGACAGAAGGCCAATCTTGATCAAGTGATTTTTCATTTTAGTAGGCTCCAATGTGTTAAGAGAGAAGCTGCAATCAAGCAATACACCATTCAAATTAAATAGAGATATTCAATTGCAATGGCTGACAATTGCATTCTTAGTATTCTTATTACCAAACCTCAAGTACTTAAAGGCACACACTACTGCATGCAGCTGACTTAAGCAAGCTGCAGGCTGCGCTGCTGATAGCATGGATGTCCCCCATTCTATTTTTGTGTGCTTGCACAGCTACATTAATGCAACTGACAACACTGCCACCTTTAATGACTCTGGTACTATGTCATCCCGCTAGCAGTTCATAAATAGCTAGCAGTGAATAAATGGCCAAAGGCAGCAAATAAAGCATCTAAATGCATGTGTTGAGTAGTCATCCTGAAGCTTAGGTGTTCAGAACCCCAGTTCCATTGGTTTATAAAACTCCTGCTGCTAAAAGCCTGACAAACAAGAAAAACTGGAATGAACATCTCCTTCTTATCTTCTGTACAG
Seq C2 exon
AAAGGATTTGGAAACATTGATGGAGAGTACTGGCTGGGACTAGAAAATATTTACATGCTTACCAATCAGGATAATTACAGACTACTGATTGAATTAGAGGACTGGAGCAACAAGAAAGTCTATGCAGAATACAGCAGTTTCCGTCTGGAGCCCGAAAATGAATTCTACAGGCTACGCTTAGGAACATACCAAGGAAACGCAGGCGATTCCATGATATGGCACAACGGAAAGCAATTTACAACACTGGACAGAGACAGAGATATGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004290:ENSGALT00000006824:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF101464=zf-C4H2=PD(4.2=13.6),PF0014713=Fibrinogen_C=PU(29.3=95.5)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(41.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCGTTCAAAGACTGCCAA
R:
TTCATTTTCGGGCTCCAGACG
Band lengths:
357-2028
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]