MmuINT0015018 @ mm9
Intron Retention
Gene
ENSMUSG00000033544 | Angptl1
Description
angiopoietin-like 1 [Source:MGI Symbol;Acc:MGI:1919963]
Coordinates
chr1:158787214-158788761:+
Coord C1 exon
chr1:158787214-158787407
Coord A exon
chr1:158787408-158788490
Coord C2 exon
chr1:158788491-158788761
Length
1083 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGTGTCTGTGTTATTAACAGAAA
3' ss Score
9.56
Exon sequences
Seq C1 exon
GACCATTCAAAGACTGTCAGCAAGCAAAGGAAGCTGGACACTCAGCCAGTGGAATTTACATGATTAAACCTGAAAACAGCAACGGTCTGATGCAGTTATGGTGTGAGAACAGTTTGGATCCTGGGGGTTGGACTGTTATTCAGAAAAGAACAGATGGCTCTGTCAATTTCTTCAGAAACTGGGAAAATTATAAG
Seq A exon
GTAAATGAGCAAGTTCAGACCTGGAGAAGGTAGACCTGAGCAGGCCTTCCAATAGTGACCCTCCCAGGCATGCTAAAAACATAACTATCCATTTGATATTCATCATCTAGCAAAAGGTTTATTATTCTCTTTTCTAGTTGAACAGCCAGAATTAAAATGTGAAAAGAAAACTAAAATTATCCTTTAAATGTATCTTTTGAGTCTGGATAACTTATACATACATGCATGCATATTTTACAAAGATAACTCAATTCCATTTTCAAGTTTTTAAATCTATATGTTGACTTGTATGAGTCTGTTTTGCCTGCATTTCTAGAGGACGACTTCCATGTTCAAACTGTGAAGCAACCACGTGCTTACTCAGGCTCAGGTGAAAATTTCTGGCAGTTAAGAATAAAACAGTAATATGTCCAGAAATTTCTAAACCTCAACTGCCACAAATTGGGAGTGGGGCAACTTCCTTGAAATCTCTTTGAAGTCAAACTTTCAGTGATAAGATGAACTTTACTAAATATATTCTGCTGCAAATGTCCAATGTCAAATGCTTATTAAAATAATTTAGTCCACTTCTTTCAGACAGTAACTTACAACTTTCACAGGGTGAACTGTAAAGATTACTATCATGCTAATTTTACTTATAATAAAATTAAAGACATACACGCTATCATTTTGTTTGAACAATGGTCATGGTTTTAGATGCACTCTGTCTGCCTACTATGGGCACAGTATCATATGCTCTCAGAACACACATCTGTGGATGAGGATGACCAGGAACCTTTCTGAAGGATTGAGGTAGTTCGATACTTTTAGAAACTATCAATGAATTTTATTGTCTTTGGCTTTACTCTTCTTTATAGCATTTGAAGCTACAAAAACTAATAGTGACATTAAAATAAAGCAAAGGAAAAGAAAGTGTCAATGTGGAACCAAAGCGCACTAACAAAAATAAGGCTGTCTACCATGGCACATCACCTTGAGTGGACAATATCCTCACTCTGCTCAGTATTTAAATTTCATTTGTAGTTGTGGCAACATTTACCATCTAAACTTACCAATATGTTCATGTGTCTGTGTTATTAACAG
Seq C2 exon
AAAGGGTTTGGAAACATTGATGGAGAGTACTGGCTTGGACTGGACAATATCTACAAGCTTAGTAATCAAGACAATTATAAGCTGATGATTGAACTAGAAGACTGGAGCGAGAAGAAGGTCTATGCAGAATACAGCAGCTTTCGTCTGGAGCCCGAAAGTGACTACTACAGACTGCGCCTGGGGACGTACCAGGGGAATGCTGGGGACTCTATGATGTGGCATAATGGTAAACAGTTCACCACGCTGGACAGAGATAAAGATACGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033544-Angptl1:NM_028333:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(29.3=96.9)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(41.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGCAAGCAAAGGAAGCT
R:
AGTAGTCACTTTCGGGCTCCA
Band lengths:
346-1429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: