GgaINT0039829 @ galGal3
Intron Retention
Gene
ENSGALG00000004290 | ANGPTL1
Description
NA
Coordinates
chr8:6652390-6653961:+
Coord C1 exon
chr8:6652390-6652660
Coord A exon
chr8:6652661-6653592
Coord C2 exon
chr8:6653593-6653961
Length
932 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TACTTCTTTCTGTTCCATAGGAA
3' ss Score
10.16
Exon sequences
Seq C1 exon
AAAGGATTTGGAAACATTGATGGAGAGTACTGGCTGGGACTAGAAAATATTTACATGCTTACCAATCAGGATAATTACAGACTACTGATTGAATTAGAGGACTGGAGCAACAAGAAAGTCTATGCAGAATACAGCAGTTTCCGTCTGGAGCCCGAAAATGAATTCTACAGGCTACGCTTAGGAACATACCAAGGAAACGCAGGCGATTCCATGATATGGCACAACGGAAAGCAATTTACAACACTGGACAGAGACAGAGATATGTATTCAG
Seq A exon
GTAAGGCAACTACCCTGTACTTGAAAAACAAACACAGTAGATTCCAGTAGCCCTTAAAGAAAAAATACAAGAGAAACGATGCAAGTTCTGATAGAATAACTCTACTCAAAGATGCTTGAAATAGATCAAGAAAAATTGCACTGACTTCATAACTTAGCTCAATGACAATCTCGCCACTTGCATGTGATTCTTTGCAGGCAGGACACCTTCCCAGGTGAGCTCCCAGAATAGCAAAGCCACATAAATACAACCTCCATGAACAGAAGCTTCTGAACAGCACCAAAGGAACTACAGCTGTGTACAGGCTCTCAGTTACATGACCAAACTTGGGAATTGACAGATCATTTAATTCTCCTTAAAGAAGGATTTGTTGCTTCTTTCTGACTCTCATCCTCCAGCCTTTCTCTAAAGCCTTACTGTTAAGAGAAGAAGCAGGGACTGTAATAATAGAACTGCACTTAAGAATTACCCTCTGCTTTTTCCTCAGCTGTCAATAACCAGAAAGCTACACAAACTCTGCAAACTCACAGAAGCCTCACAGAGTAAATGCACAAATTGCAAGCAGCAATTTGTGGAACCGTGGACCCGAGTGCTGCTTGGGACTGCATTAATACACATTACTTCCACAGAAGTATTTCTAAACAGTACATAACCCAAGTTCTTTGAACGTTAGCTCACTGAGAAGCACTGCTAGTATTCTGCAAAGAGCTGATTTCCTTAGTTTTCACCTGTAACATTAAGCACTGTGTTAATCACTTCCCTCTAGGCAATAGGAGTTACAACAGAAAACATAATTTAAGTAAGCAACTGATAGGACTGATAGGACGTCTAAAATCCCCTCTATGAATAAGCCAGAATGTGAAAGTGTTTGCTGATCTCTTGCATTTCTCCTCTATTAGCACTGACTTCACCTACTTCTTTCTGTTCCATAG
Seq C2 exon
GAAACTGTGCTCATTTCCACAAAGGGGGCTGGTGGTACAACGCGTGCGCACACTCCAATCTGAACGGGGTGTGGTACAGAGGAGGCCACTACAGGAGCAAGTACCAGGATGGAATATTTTGGGCTGAGTACCGGGGAGGTTCCTACTCCTTGAAAGCAGTTCAAATGATGATCAGACCTATAGACTGAGGAGGAAAAGTCCGCAGTGCTCAAGCCAGCAAGCATAAACTTACTGGTGCTTGAGTTACAGAAAAATAAAATGTTACTTTCAAATCATTATTTTGCACAATCTGTCCCTGCAAAATGCAGGTCTTCTATTTTCCTTTCTTCCCAGTTGCCCCTTGCCTTTTTTTTTTTTTTTAATTAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004290:ENSGALT00000006824:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(41.9=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(27.9=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAGTACTGGCTGGGAC
R:
CTCCTGTAGTGGCCTCCTCTG
Band lengths:
349-1281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]