MmuINT0015019 @ mm10
Intron Retention
Gene
ENSMUSG00000033544 | Angptl1
Description
angiopoietin-like 1 [Source:MGI Symbol;Acc:MGI:1919963]
Coordinates
chr1:156858360-156861078:+
Coord C1 exon
chr1:156858360-156858630
Coord A exon
chr1:156858631-156860414
Coord C2 exon
chr1:156860415-156861078
Length
1784 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TGTCTCTATTTCTCCTGCAGGAA
3' ss Score
12.55
Exon sequences
Seq C1 exon
AAAGGGTTTGGAAACATTGATGGAGAGTACTGGCTTGGACTGGACAATATCTACAAGCTTAGTAATCAAGACAATTATAAGCTGATGATTGAACTAGAAGACTGGAGCGAGAAGAAGGTCTATGCAGAATACAGCAGCTTTCGTCTGGAGCCCGAAAGTGACTACTACAGACTGCGCCTGGGGACGTACCAGGGGAATGCTGGGGACTCTATGATGTGGCATAATGGTAAACAGTTCACCACGCTGGACAGAGATAAAGATACGTACACAG
Seq A exon
GTAAAGCAAACAAGCATGGCTGTCATTCAATACGTGCTACACATTAAACAGAACCAGGCCCTCAATCTCACAAAGGGTATTTTGGACACAGTCAAAGGGAATATATATAATCTGGTTTTTAGGATTTCTAAGGCAACCTCAATGTTCTTTGGGAAAAACAAGTTCTGGGGAGAGCCAAAACAAAACCAACCTATACCCACTTGAAAATGAAACTCTGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCAGTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCTGTAATGAGAGCTGATGCCTTCTGGTGGTGTGTCAGAAGACAGCTACAGTGTACTTATACATAATAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAAAGAAAATGAAACTCTGACTAACATTGGTATATAGCTGGACACCAACCATGTCAGAAACTGTAGATGCTGGAGACTCAGTGGGGAACTAAATTTTTGTCCTTTGGGGGTTCCTTTCAAGAGGAGACAAAATGTTTTATTAGGTGGAGATAAATATTCTTAGAAAAATGAAACCAAGTAACAGTTTTTAGTTCCTTTTTCTGCTGCTATGATAAAACTATGAGAAAAGCAACTTAAGGGGTAAGGAGAGGCTAAAGGGGTTTGCTTCAGCTCACAGCTCCAGGCTATAGTTCCTCAGAGCAAGGAAGTCATGGCAGCAAGAGCTTGAGGGATTTGGTGACATCACACCCACAATCAGGAGCACAGAGCGACAAAGGTATAATGCTGGTGGCTCAGCTTGCTTTCTGCATTCTTATTCAGTTGAGAAACTTCCGCCTAAGGAGTGATACCACCTACTGCAGGCAGATCTTCCTACCTCAATTAACTTAATCAAGAAAATCCCCCAAGAACATGCCTGTAGGCCAACCTAACCTACACAGCTCCCAGTGAGACTCCCTTCCCAGATTATGTCAAGTTGGCAATAACACTAACAATCCATCAGGGAACAGAATATGGCTGGGGGCATCAGGCTCTTGGGTGGGTGCTGTTGTCCAGAAAAGGTTCTTATGAGATGACATCATCTCAACAAAGGCTTATGGGAGGTAAACCATTTAGCTATATGGTCTAAGAGTATGTCTTAGATGGAAACAGCAGAGACTGAAATGCAGCACAATGGTGGTAAAATCACTTGAGGTGGAGGAGAAAGAAATAGTTTCATGAAATTTAATCTACTATACTTCTGTCTTTTTAAAAACATGTTTCTGTACTGATAAAAGACATACCTACCATGAATACTGACTTAACTTTGTATTCAGCTATTGCCTTACCAAGCAGCATATTGGACACTATTTTAACTTACTTCCTACCGGCAAAAGAGGAAGGAGAGAGCCAGGACTGAAAGCCCGCCTTTCTGTTTACACTCATTTAATTAGCTGAGCTACTTCCAGACTTCAATTTTCCTTCAAGCTCTGCCATCTCCCTTAGTCAATCCTGCCCATTTCACCTTTGTCTCCCTCAATATATTTCTTAAACACAAATACTGCATGTATTTACTCTACTTTGAAGAAAATGAAATTATTTAAATGTTAAGTCAGCACAGAGTGAAATGAATACGGTAATTCTAGTAAAGTGAGTAATGAGAAGTGACTCCTCCTGGAGTCAGTCACTCAAACGGCTCCAAAAGAAGCACATACGTGTGGCAGTCTGCAAGTGTCATGGCACAGAAGGACTCTTACTTCACTGTCTCTATTTCTCCTGCAG
Seq C2 exon
GAAACTGCGCCCACTTCCATAAAGGAGGCTGGTGGTACAACGCCTGTGCACACTCTAACCTCAACGGAGTATGGTACAGAGGTGGTCATTACAGAAGCAAGCACCAAGATGGCATTTTCTGGGCTGAATACAGAGGCGGGTCCTACTCCTTGAGGGCAGTACAGATGATGATCAAGCCTATTGACTGACACCTCCAAGTAAATGACACAGAACTTCACTTCCAGTTCCCCAAATCTAAACATTACACGTTACTCTGCACAACTTATTTTTACAGGTACAGTTTTTAAAATACATTTTACTACTATAAAAATGTATCTGTGAAAACAGTTCCATTCTCCTTCAAGGAAGATTATGCAAATCCTTGTTATTTTAAAAATTATATTGACTGAATATTGGTAAATGTAAATATTGGCCACAATGTAAAACAAATCTTAGCTTTATTTTGAATCAAATCCAAATACATGTTCAAGATACTTCATGATTTATTTAAAAAATATAAGTCTGCTCTAACTTTCACTGAAAAAAATTATTTCAAGAGTTCAGCCAATTAGTGCATTTTATTTATGAAAATACAGACAGGAAACTAGAGGAAAAAAACTCTAGTTTTGCCACTAGGAAATGTTTTTCCAGTAAGTACAACTTTAAAATAAAATTTTAAATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033544:ENSMUST00000027885:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=FE(41.9=100)
A:
NA
C2:
PF0014713=Fibrinogen_C=PD(27.9=95.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACTGGCTTGGACTGGACA
R:
CCATCTTGGTGCTTGCTTCTG
Band lengths:
358-2142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types