GgaINT0039867 @ galGal4
Intron Retention
Gene
ENSGALG00000002090 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
Coordinates
chr8:1317584-1318297:+
Coord C1 exon
chr8:1317584-1317719
Coord A exon
chr8:1317720-1318154
Coord C2 exon
chr8:1318155-1318297
Length
435 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTGCTTTACTGTTGTTTTAGGTT
3' ss Score
9.88
Exon sequences
Seq C1 exon
GACAATTGGAGATCTGGTGGGAGAAGCTAAAGCTAGTGGAAATCTGGGCAACACCTTGAAGGTACTTGGAAACTTTGAAGAAGCTATTGTTTGTTGTCAGAGACATCTGGATATTTCCAGAGAGCTTAATGATAAG
Seq A exon
GTGAGTGATGTTAGGAATCCAGAAATGAACTCCTAAGAATACTTATTAGTGAGCCCTGTTGTTTGGTAATGTGTGCCATCTTTCAGAGGAAATTAAATACTGAATATTCCAGTATTTCTAATAGACAATATGAATCTGTCAGTTATAAGGTGTCTGTTTGCACCTAGGAGACTTTGTAAAAAAAAATTATTTTATTAATTGGCCTCAATAATTACTATGTATCTTATATACCTCAAAAGGAAATAACATGTGATACAATTGAATGGAGGAGCACAAGTGGGCGTGATGTGGGTAGACAATGAGAGCATACTCGGAATGGGCAGTGTGCATTGGCAAGTAGTGAACAAACTCCTTTCTGTGGGTTGCACTAAAGGTGGTTGTGACACAGGAGTTGGAAGCAGAAAGTTTTAATGCCTTGCTTTACTGTTGTTTTAG
Seq C2 exon
GTTGGAGAAGCTAGAGCACTGTATAATCTGGGAAATGTTTATCACTCTAAAGGGAAAAATGTGGCTTGTGCTGGGACACATGATCCAGGGGAGCTTCCAGAGGATGTGAAAAATGCTTTGCAAAAAGCTGCAAATTACTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002090:ENSGALT00000003258:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.104
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(61.7=80.4)
A:
NA
C2:
PF134241=TPR_12=PD(35.0=43.8),PF134241=TPR_12=PU(18.3=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTGGAGATCTGGTGGGAGA
R:
TCATAGTAATTTGCAGCTTTTTGC
Band lengths:
278-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]