MmuINT0073453 @ mm9
Intron Retention
Gene
ENSMUSG00000027883 | Gpsm2
Description
G-protein signalling modulator 2 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1923373]
Coordinates
chr3:108504663-108505452:-
Coord C1 exon
chr3:108505317-108505452
Coord A exon
chr3:108504806-108505316
Coord C2 exon
chr3:108504663-108504805
Length
511 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTGTTGCCGTCTCCATCTAGGTG
3' ss Score
11.36
Exon sequences
Seq C1 exon
GACTATTGGAGACCAACTTGGGGAAGCTAAAGCCAGCGGCAATCTCGGAAACACCTTAAAGGTGCTTGGGAATTTTGATGAAGCGATAGTGTGTTGCCAGCGACACCTGGATATCTCCAGAGAGCTTAATGACAAG
Seq A exon
GTAATAAAGATGGCGGGCCAAGTGACGGTGACTTCGCTGAAGTAGTTTTGTGTTCTAGCACTACTTCCATGGTTTGCCTACAAAGGAAGGTGTGTTCATAGACAAAAGTCAAAGAGAAAACAAAAGTATTTTTAAAATAGGAGAAGCAAATAGCAAAAGAACCTTCTTTGTGAGTGAAATCACGTGTTTGACTTTCTGTGGATGGGCACTAGGGACCCGTCCTTTTCTTGATAATAGTACTGGGAATGTTGTACACATGGGGCCGGTAAGATGGCTCACTGGGTAAGGACACTTGCCGTGCAAGCCTGGTGACCTTGCTTCATTCCCGGAACCTGCAGAAGGCTGGAAGGGGCGCACTCTGAGTTCCACGTGTGCTGCGGCACACGCACTACCCACACACATCGTGCACACACACGTGGTGATAGCACATTAAGTCAGTACGTGGCAGAAGCAGTGAGAACCCCATGGCCTCTGACTTCAGAATGTAAGCTTTGTTGCCGTCTCCATCTAG
Seq C2 exon
GTGGGAGAAGCAAGAGCGCTCTACAATCTTGGAAATGTCTATCACGCCAAAGGGAAAAGCTTTGGTTGCCCGGGTCCGCAGGATACAGGAGAGTTTCCAGAAGACGTGAGAAATGCCCTACAGGCAGCTGTGGATCTCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027883-Gpsm2:NM_029522:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(0.1=0.0),PF134241=TPR_12=PU(64.5=87.0)
A:
NA
C2:
PF134241=TPR_12=PD(32.3=41.7),PF134241=TPR_12=PU(18.3=22.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTATTGGAGACCAACTTGGGGA
R:
TCATAGAGATCCACAGCTGCCT
Band lengths:
278-789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: