GgaINT0039868 @ galGal4
Intron Retention
Gene
ENSGALG00000002090 | GPSM2
Description
G-protein signaling modulator 2 [Source:HGNC Symbol;Acc:HGNC:29501]
Coordinates
chr8:1318155-1318906:+
Coord C1 exon
chr8:1318155-1318297
Coord A exon
chr8:1318298-1318782
Coord C2 exon
chr8:1318783-1318906
Length
485 bp
Sequences
Splice sites
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
3' ss Seq
TTCTCACTTCTTCAAAACAGGGA
3' ss Score
7.41
Exon sequences
Seq C1 exon
GTTGGAGAAGCTAGAGCACTGTATAATCTGGGAAATGTTTATCACTCTAAAGGGAAAAATGTGGCTTGTGCTGGGACACATGATCCAGGGGAGCTTCCAGAGGATGTGAAAAATGCTTTGCAAAAAGCTGCAAATTACTATGA
Seq A exon
GTAAGTAGTAGCTCTAAATACTGGTGATTGAGAAGATACATTCATCTGGTTTGTTTAATTATTGAGATTTGTGGAGTCATGAGCTGTGAATGTCTTCCTTTCTAACTGGAGAGTACACAATTTTTTGTTTAGCTCTCATTTTCAGTGTACCTTTTATTACCAGGTTAGTCCTTCCCGTACATTAGAATTCAGCATTATTCTTAGAACAAGACTGAGACAACTGAATTATGTGTACTTGCATGTAATATAGCTTTTTTTCTTAGAAACAAGCAGGCCAGCATGAACAAGAACGCAGTTCAGTATTTCACTGAAAGTGTTCACTACTCTGTGGAGGAACTGTGGTTGCATAAAGGCCTCTAAAGTAGGCCAAAGCAGAATACCCTGCTTTTCCCTTTATCTAAAAAGGAAGAAGATCTGTTTACGTGACTGTGAGAAAAAATAACTTCAAAGGCACTAGTCTCTCTTTTCTCACTTCTTCAAAACAG
Seq C2 exon
GGAAAACCTGACGATAGTCACAGAGCTGGGTGATAGAGCAGCACAAGGACGTGCCTTTGGAAATCTGGGAAACACACACTACCTTCTGGGCAACTTCAGGAGTGCAGTTTTAGCCCATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002090:ENSGALT00000003258:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(35.0=43.8),PF134241=TPR_12=PU(18.3=22.9)
A:
NA
C2:
PF134241=TPR_12=FE(68.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAGAAGCTAGAGCACTGT
R:
CATGGGCTAAAACTGCACTCCT
Band lengths:
262-747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]